Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 7.1e-164 580.5 285 100.0
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 5.2e-90 335.1 283 57.6
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 5.2e-90 335.1 284 58.8
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 8.9e-90 334.3 283 57.2
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 5.8e-89 331.6 285 57.2
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 1.7e-88 330.1 275 58.5
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.2e-88 329.7 284 57.7
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.2e-88 329.7 284 57.7
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.2e-88 329.7 285 58.2
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 2.9e-88 329.3 283 56.5
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 2.9e-88 329.3 284 57.7
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 2.9e-88 329.3 282 57.4
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 3.7e-88 328.9 283 56.2
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 3.7e-88 328.9 283 57.6
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 3.7e-88 328.9 285 56.8
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 4.9e-88 328.6 274 56.6
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 6.4e-88 328.2 284 57.0
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 6.4e-88 328.2 284 57.0
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 6.4e-88 328.2 280 57.5
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 6.4e-88 328.2 283 56.5
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 8.3e-88 327.8 272 57.4
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 8.3e-88 327.8 284 57.0
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 8.3e-88 327.8 284 57.0
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 8.3e-88 327.8 274 56.2
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 8.3e-88 327.8 282 56.4
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.1e-87 327.4 271 58.7
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.1e-87 327.4 275 59.3
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.1e-87 327.4 284 57.4
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 1.1e-87 327.4 282 57.1
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.4e-87 327.0 284 56.7
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 1.9e-87 326.6 284 57.0
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 1.9e-87 326.6 284 57.0
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.9e-87 326.6 284 56.3
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.9e-87 326.6 284 57.0
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 2.4e-87 326.2 284 56.7
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 2.4e-87 326.2 268 59.3
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 2.4e-87 326.2 284 57.4
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 2.4e-87 326.2 268 59.3
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.2e-87 325.9 275 58.9
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 3.2e-87 325.9 275 57.8
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 4.1e-87 325.5 282 56.7
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 4.1e-87 325.5 276 58.7
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 5.4e-87 325.1 285 55.8
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 7.1e-87 324.7 284 56.3
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.1e-87 324.7 284 57.7
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.1e-87 324.7 284 57.7
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.1e-87 324.7 284 57.7
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 7.1e-87 324.7 285 56.1
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 9.2e-87 324.3 272 58.1
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 1.2e-86 323.9 284 57.7
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.2e-86 323.9 282 57.4
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.2e-86 323.9 282 57.4
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 1.2e-86 323.9 285 56.5
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 1.6e-86 323.6 284 56.3
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 1.6e-86 323.6 270 58.9
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.6e-86 323.6 283 56.2
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.6e-86 323.6 269 58.7
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 2.1e-86 323.2 284 56.3
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.1e-86 323.2 270 58.9
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 2.1e-86 323.2 262 59.5
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.1e-86 323.2 285 55.8
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 2.7e-86 322.8 283 56.5
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.7e-86 322.8 283 55.5
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 2.7e-86 322.8 282 57.1
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 2.7e-86 322.8 272 58.5
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 3.5e-86 322.4 284 56.0
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 3.5e-86 322.4 268 58.6
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.5e-86 322.4 282 57.1
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.5e-86 322.4 274 55.8
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 3.5e-86 322.4 284 56.3
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 4.6e-86 322.0 284 57.0
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 4.6e-86 322.0 269 58.4
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.0e-86 321.6 270 58.5
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.0e-86 321.6 270 58.5
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 6.0e-86 321.6 284 56.3
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 6.0e-86 321.6 284 56.3
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 6.0e-86 321.6 284 56.3
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 6.0e-86 321.6 262 58.4
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 7.8e-86 321.2 267 58.8
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 7.8e-86 321.2 284 56.0
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 7.8e-86 321.2 282 56.7
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 1.0e-85 320.9 284 56.7
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.0e-85 320.9 284 57.0
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.0e-85 320.9 270 58.5
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 1.0e-85 320.9 284 56.3
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.0e-85 320.9 267 58.4
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.3e-85 320.5 283 54.8
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 1.3e-85 320.5 284 56.7
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.3e-85 320.5 275 57.5
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.3e-85 320.5 276 57.2
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.7e-85 320.1 269 58.4
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 2.3e-85 319.7 283 54.8
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 2.3e-85 319.7 275 57.5
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 3.0e-85 319.3 286 55.9
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 3.9e-85 318.9 282 54.6
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 3.9e-85 318.9 283 55.8
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 5.1e-85 318.5 285 55.4
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 5.1e-85 318.5 284 55.6
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 6.6e-85 318.2 283 54.8
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 6.6e-85 318.2 283 54.8
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 6.6e-85 318.2 276 55.1
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 8.6e-85 317.8 268 57.8
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 8.6e-85 317.8 259 59.5
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 8.6e-85 317.8 282 56.4
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.5e-84 317.0 268 57.8
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 1.5e-84 317.0 268 57.8
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.9e-84 316.6 281 53.4
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.9e-84 316.6 272 56.2
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 2.5e-84 316.2 284 56.0
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 2.5e-84 316.2 284 55.6
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.3e-84 315.8 284 55.3
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 3.3e-84 315.8 276 56.5
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 4.3e-84 315.5 279 55.9
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 4.3e-84 315.5 272 56.2
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 5.6e-84 315.1 282 55.3
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 7.3e-84 314.7 283 54.4
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.2e-83 313.9 282 54.6
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.8e-83 312.8 283 55.8
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 3.6e-83 312.4 282 55.0
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 3.6e-83 312.4 276 52.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 3.6e-83 312.4 268 57.5
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 3.6e-83 312.4 277 56.0
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 6.2e-83 311.6 271 55.7
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 6.2e-83 311.6 282 55.0
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 5.2e-82 308.5 287 52.3
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.2e-81 307.4 276 55.4
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.5e-81 307.0 270 54.4
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 1.5e-81 307.0 288 52.4
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 2.0e-81 306.6 268 56.0
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 7.6e-81 304.7 282 53.9
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 8.4e-80 301.2 274 55.1
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 3.2e-79 299.3 274 54.7
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 5.4e-79 298.5 261 55.2
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 7.1e-79 298.1 289 50.5
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.2e-78 297.4 281 54.1
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 2.1e-78 296.6 279 53.4
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.1e-75 286.6 282 49.6
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 8.1e-75 284.6 281 52.3
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 4.0e-74 282.3 268 50.4
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.8e-72 275.8 281 51.2
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 4.2e-71 272.3 278 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 2.1e-70 270.0 285 47.7
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 3.5e-70 269.2 224 59.8
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 2.3e-69 266.5 224 58.5
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.5e-68 263.1 274 48.5
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.5e-68 263.1 274 48.5
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 3.6e-67 259.2 242 52.9
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.4e-65 252.7 218 56.4
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 3.4e-65 252.7 285 47.7
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 4.5e-65 252.3 212 58.0
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 2.4e-63 246.5 245 52.2
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 2.7e-62 243.0 273 46.9
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.9e-53 212.6 274 42.7
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 1.5e-49 200.7 170 57.1
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 2.0e-49 200.3 172 57.0
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 2.2e-48 196.8 175 55.4
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 4.9e-48 195.7 168 56.5
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 4.9e-48 195.7 172 55.2
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.1e-47 194.5 183 54.6
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 6.0e-46 188.7 228 46.9
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 2.5e-44 183.3 166 53.6
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.3e-44 183.0 214 47.2
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 5.7e-44 182.2 218 46.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.8e-43 179.9 218 45.9
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 3.7e-43 179.5 168 53.0
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 6.9e-42 175.3 141 58.9
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 2.9e-40 169.9 197 48.7
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.9e-40 169.9 271 38.7
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.1e-39 167.9 282 35.5
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 3.9e-37 159.5 197 47.2
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 8.8e-37 158.3 147 54.4
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 8.8e-37 158.3 147 54.4
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 1.8e-34 150.6 109 65.1
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 6.9e-34 148.7 242 39.7
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.5e-33 147.5 279 33.7
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 1.8e-26 124.0 118 51.7
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 1.4e-23 114.4 104 48.1
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.6e-22 110.9 124 49.2
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 3.3e-20 103.2 73 63.0
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 9.7e-20 101.7 92 45.7
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 2.8e-19 100.1 98 46.9
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 3.7e-19 99.8 92 47.8
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 9.1e-10 68.6 69 46.4


User provided reference genes

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