Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1019T25 Lonicera japonica HOM05D000713 ORTHO05D000547 6.0e-94 347.4 168 100.0
Lj2P1019T20 Lonicera japonica HOM05D000713 ORTHO05D000547 7.4e-44 181.0 147 69.4
Gohir.D05G105400 Gossypium hirsutum HOM05D000713 ORTHO05D000547 1.4e-34 150.2 155 54.8
Hma1.2p1_0297F.1_g117120 Hydrangea macrophylla HOM05D000713 ORTHO05D000547 4.1e-34 148.7 168 54.2
Dinv32705 Davidia involucrata HOM05D000713 ORTHO05D002604 7.0e-34 147.9 143 58.7
Gorai.009G109400 Gossypium raimondii HOM05D000713 ORTHO05D000547 7.0e-34 147.9 155 54.2
Actinidia24120 Actinidia chinensis HOM05D000713 ORTHO05D000547 1.2e-33 147.1 140 57.9
Hma1.2p1_0297F.1_g117135 Hydrangea macrophylla HOM05D000713 ORTHO05D000547 5.9e-33 144.8 159 54.1
Oeu056300.1 Olea europaea HOM05D000713 ORTHO05D000547 1.0e-32 144.1 141 59.6
COL.COLO4_18296 Corchorus olitorius HOM05D000713 ORTHO05D000547 1.3e-32 143.7 161 50.9
COL.COLO4_18298 Corchorus olitorius HOM05D000713 ORTHO05D000547 1.3e-32 143.7 161 52.2
CANSAT35G1183 Cannabis sativa HOM05D000713 ORTHO05D000547 2.2e-32 142.9 140 56.4
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.8e-32 142.1 141 58.9
Medtr2g095130 Medicago truncatula HOM05D000713 ORTHO05D000547 3.8e-32 142.1 147 53.1
Nitab4.5_0004403g0020 Nicotiana tabacum HOM05D000713 ORTHO05D000547 6.5e-32 141.4 140 55.7
CAN.G631.49 Capsicum annuum HOM05D000713 ORTHO05D000547 1.5e-31 140.2 146 55.5
COL.COLO4_18297 Corchorus olitorius HOM05D000713 ORTHO05D000547 3.2e-31 139.0 165 51.5
TPR.G11552 Trifolium pratense HOM05D000713 ORTHO05D000547 3.2e-31 139.0 153 50.3
Ciclev10030227m.g Citrus clementina HOM05D000713 ORTHO05D000547 5.5e-31 138.3 154 51.9
Rhsim13G0096500 Rhododendron simsii HOM05D000713 ORTHO05D000547 7.2e-31 137.9 143 51.7
Solyc11g069880.1 Solanum lycopersicum HOM05D000713 ORTHO05D000547 1.6e-30 136.7 148 54.1
CANSAT11G0631 Cannabis sativa HOM05D000713 ORTHO05D000547 2.1e-30 136.3 140 55.0
Dinv32709 Davidia involucrata HOM05D000713 ORTHO05D000547 2.1e-30 136.3 138 56.5
Sopen11g028400 Solanum pennellii HOM05D000713 ORTHO05D000547 2.1e-30 136.3 148 53.4
Psat5g279600 Pisum sativum HOM05D000713 ORTHO05D000547 3.6e-30 135.6 149 53.0
vmacro03219 Vaccinium macrocarpon HOM05D000713 ORTHO05D000547 3.6e-30 135.6 142 53.5
QL01p022528 Quercus lobata HOM05D000713 ORTHO05D000547 6.1e-30 134.8 147 52.4
arahy.Tifrunner.gnm1.ann1.ZKH742 Arachis hypogaea HOM05D000713 ORTHO05D000547 8.0e-30 134.4 143 51.0
CANSAT78G1336 Cannabis sativa HOM05D000713 ORTHO05D000547 8.0e-30 134.4 140 52.9
arahy.Tifrunner.gnm1.ann1.4DPV3H Arachis hypogaea HOM05D000713 ORTHO05D000547 1.0e-29 134.0 143 50.3
Medtr2g095080 Medicago truncatula HOM05D000713 ORTHO05D000547 1.0e-29 134.0 150 52.0
Rhsim13G0096800 Rhododendron simsii HOM05D000713 ORTHO05D000547 1.0e-29 134.0 143 51.0
GSVIVG01025225001 Vitis vinifera HOM05D000713 ORTHO05D000547 1.8e-29 133.3 157 47.1
Lj3g0016471 Lotus japonicus HOM05D000713 ORTHO05D000547 2.3e-29 132.9 142 53.5
vmacro03218 Vaccinium macrocarpon HOM05D000713 ORTHO05D000547 2.3e-29 132.9 159 47.8
Thecc.09G345100 Theobroma cacao HOM05D000713 ORTHO05D000547 3.0e-29 132.5 161 48.4
CAN.G631.50 Capsicum annuum HOM05D000713 ORTHO05D000547 4.0e-29 132.1 146 53.4
arahy.Tifrunner.gnm1.ann1.DEFA3T Arachis hypogaea HOM05D000713 ORTHO05D000547 6.8e-29 131.3 143 49.7
PGSC0003DMG400008098 Solanum tuberosum HOM05D000713 ORTHO05D000547 6.8e-29 131.3 150 50.7
TWI31G0845 Tripterygium wilfordii HOM05D000713 ORTHO05D000547 1.2e-28 130.6 148 48.6
QL01p022595 Quercus lobata HOM05D000713 ORTHO05D000547 1.5e-28 130.2 149 51.0
CAN.G631.48 Capsicum annuum HOM05D000713 ORTHO05D000547 2.0e-28 129.8 139 52.5
PGSC0003DMG400008100 Solanum tuberosum HOM05D000713 ORTHO05D000547 2.0e-28 129.8 150 50.0
Manes.11G148300 Manihot esculenta HOM05D000713 ORTHO05D000547 2.6e-28 129.4 142 50.0
Manes.11G148401 Manihot esculenta HOM05D000713 ORTHO05D000547 3.4e-28 129.0 143 51.0
Manes.11G148100 Manihot esculenta HOM05D000713 ORTHO05D000547 4.4e-28 128.6 131 55.0
Sed0003523 Sechium edule HOM05D000713 ORTHO05D000547 4.4e-28 128.6 143 50.3
vmacro03216 Vaccinium macrocarpon HOM05D000713 ORTHO05D000547 4.4e-28 128.6 142 50.7
Potri.017G153100 Populus trichocarpa HOM05D000713 ORTHO05D000547 5.7e-28 128.3 144 50.7
MD11G1140700 Malus domestica HOM05D000713 ORTHO05D000547 2.2e-27 126.3 149 49.7
CSS0041435 Camellia sinensis var. sinensis HOM05D000713 ORTHO05D000547 2.8e-27 125.9 129 55.0
Cpa.g.sc65.10 Carica papaya HOM05D000713 ORTHO05D000547 2.8e-27 125.9 143 49.0
Medtr2g095060 Medicago truncatula HOM05D000713 ORTHO05D000547 2.8e-27 125.9 147 49.7
MELO3C024937.2 Cucumis melo HOM05D000713 ORTHO05D000547 6.3e-27 124.8 144 52.1
Prupe.6G105800 Prunus persica HOM05D000713 ORTHO05D000547 6.3e-27 124.8 147 49.0
CsaV3_6G014100 Cucumis sativus L. HOM05D000713 ORTHO05D000547 8.3e-27 124.4 148 49.3
CiPaw.14G085500 Carya illinoinensis HOM05D000713 ORTHO05D000547 2.4e-26 122.9 146 50.0
MELO3C026925.2 Cucumis melo HOM05D000713 ORTHO05D000547 3.1e-26 122.5 141 51.1
Eucgr.B02525 Eucalyptus grandis HOM05D000713 ORTHO05D000547 3.1e-26 122.5 150 52.7
Eucgr.B02526 Eucalyptus grandis HOM05D000713 ORTHO05D000547 3.1e-26 122.5 150 52.7
Glyma.13G324100 Glycine max HOM05D000713 ORTHO05D000547 3.1e-26 122.5 146 49.3
GSVIVG01025223001 Vitis vinifera HOM05D000713 ORTHO05D000547 3.1e-26 122.5 133 52.6
Haze_23773 Corylus avellana HOM05D000713 ORTHO05D000547 4.1e-26 122.1 150 50.7
CsaV3_7G012650 Cucumis sativus L. HOM05D000713 ORTHO05D000547 4.1e-26 122.1 144 50.7
PGSC0003DMG400008096 Solanum tuberosum HOM05D000713 ORTHO05D000547 4.1e-26 122.1 151 49.7
RcHm_v2.0_Chr5g0058241 Rosa chinensis HOM05D000713 ORTHO05D000547 7.0e-26 121.3 146 48.6
Rhsim13G0096700 Rhododendron simsii HOM05D000713 ORTHO05D000547 9.1e-26 120.9 138 49.3
PGR102G1016 Punica granatum HOM05D000713 ORTHO05D000547 1.2e-25 120.6 125 53.6
CiPaw.14G079300 Carya illinoinensis HOM05D000713 ORTHO05D000547 2.0e-25 119.8 142 49.3
MELO3C026923.2 Cucumis melo HOM05D000713 ORTHO05D000547 2.0e-25 119.8 148 48.6
Migut.L00723 Erythranthe guttata HOM05D000713 ORTHO05D000547 2.0e-25 119.8 158 46.8
ClCG02G021300 Citrullus lanatus HOM05D000713 ORTHO05D000547 5.9e-25 118.2 152 46.7
Sed0026359 Sechium edule HOM05D000713 ORTHO05D000547 7.7e-25 117.9 147 46.9
Migut.L00686 Erythranthe guttata HOM05D000713 ORTHO05D000547 1.0e-24 117.5 148 48.0
RcHm_v2.0_Chr5g0022271 Rosa chinensis HOM05D000713 ORTHO05D000547 1.0e-24 117.5 147 46.9
Sabra12G0077600 Salix brachista HOM05D000713 ORTHO05D000547 1.7e-24 116.7 143 49.0
Sed0009398 Sechium edule HOM05D000713 ORTHO05D000547 5.0e-24 115.2 147 46.3
Cfa011289 Carpinus fangiana HOM05D000713 ORTHO05D000547 8.5e-24 114.4 141 48.9
Medtr2g095170 Medicago truncatula HOM05D000713 ORTHO05D000547 8.5e-24 114.4 127 52.0
PGR102G1514 Punica granatum HOM05D000713 ORTHO05D000547 1.1e-23 114.0 141 46.8
CsaV3_6G014090 Cucumis sativus L. HOM05D000713 ORTHO05D000547 1.5e-23 113.6 170 44.1
Nitab4.5_0004479g0020 Nicotiana tabacum HOM05D000713 ORTHO05D000547 1.9e-23 113.2 142 49.3
Nitab4.5_0002461g0060 Nicotiana tabacum HOM05D000713 ORTHO05D000547 2.5e-23 112.8 141 48.9
Eucgr.B02523 Eucalyptus grandis HOM05D000713 ORTHO05D000547 3.2e-23 112.5 139 51.1
MELO3C026924.2 Cucumis melo HOM05D000713 ORTHO05D000547 4.2e-23 112.1 151 45.0
Ciclev10029991m.g Citrus clementina HOM05D000713 ORTHO05D000547 5.5e-23 111.7 170 42.4
Eucgr.B02524 Eucalyptus grandis HOM05D000713 ORTHO05D000547 5.5e-23 111.7 138 48.6
Eucgr.K00024 Eucalyptus grandis HOM05D000713 ORTHO05D000547 5.5e-23 111.7 141 51.8
PGSC0003DMG400008099 Solanum tuberosum HOM05D000713 ORTHO05D000547 5.5e-23 111.7 152 44.1
Prupe.6G105400 Prunus persica HOM05D000713 ORTHO05D000547 3.6e-22 109.0 146 44.5
Peaxi162Scf00115g00132 Petunia axillaris HOM05D000713 ORTHO05D000547 8.0e-22 107.8 135 51.1
Solyc11g069870.1 Solanum lycopersicum HOM05D000713 ORTHO05D000547 8.0e-22 107.8 125 52.0
CAN.G631.51 Capsicum annuum HOM05D000713 ORTHO05D000547 1.0e-21 107.5 136 47.1
Sed0009388 Sechium edule HOM05D000713 ORTHO05D000547 1.0e-21 107.5 151 43.7
CsaV3_6G014080 Cucumis sativus L. HOM05D000713 ORTHO05D000547 2.6e-20 102.8 137 44.5
TAR623G1790 Trochodendron aralioides HOM05D000713 ORTHO05D000547 3.4e-20 102.4 122 50.0
Eucgr.G00736 Eucalyptus grandis HOM05D000713 ORTHO05D000547 4.4e-20 102.1 165 41.2
Gorai.009G109500 Gossypium raimondii HOM05D000713 ORTHO05D000547 1.7e-19 100.1 150 44.7
Potri.009G009700 Populus trichocarpa HOM05D000713 ORTHO05D000547 6.3e-19 98.2 123 46.3
Sopen11g028410 Solanum pennellii HOM05D000713 ORTHO05D000547 1.4e-18 97.1 126 48.4
SMO146G0155 Selaginella moellendorffii HOM05D000713 ORTHO05D000547 4.1e-18 95.5 149 42.3
Lj3g0019946 Lotus japonicus HOM05D000713 ORTHO05D000547 7.0e-18 94.7 135 45.2
SEGI_19353 Sequoiadendron giganteum HOM05D000713 ORTHO05D000547 7.0e-18 94.7 154 39.0
Eucgr.G00742 Eucalyptus grandis HOM05D000713 ORTHO05D000547 1.2e-17 94.0 135 45.2
arahy.Tifrunner.gnm1.ann1.4NFM4H Arachis hypogaea HOM05D000713 ORTHO05D000547 4.5e-17 92.0 155 37.4
SMO146G0391 Selaginella moellendorffii HOM05D000713 ORTHO05D000547 1.7e-16 90.1 146 40.4
CsaV3_7G011290 Cucumis sativus L. HOM05D000713 ORTHO05D000547 2.3e-16 89.7 138 43.5
arahy.Tifrunner.gnm1.ann1.JHJ4T8 Arachis hypogaea HOM05D000713 ORTHO05D000547 3.8e-16 89.0 155 37.4
Prupe.2G033300 Prunus persica HOM05D000713 ORTHO05D000547 4.7e-14 82.0 124 42.7
PGSC0003DMG400008097 Solanum tuberosum HOM05D000713 ORTHO05D000547 6.1e-14 81.6 114 44.7
Pp3c5_25540 Physcomitrium patens HOM05D000713 ORTHO05D000547 2.3e-13 79.7 151 32.5
TPR.G11502 Trifolium pratense HOM05D000713 ORTHO05D000547 2.2e-11 73.2 99 45.5
Eucgr.I00364 Eucalyptus grandis HOM05D000713 ORTHO05D000547 1.8e-10 70.1 140 38.6
CsaV3_6G014070 Cucumis sativus L. HOM05D000713 ORTHO05D000547 3.2e-10 69.3 79 50.6
FvH4_4g25200 Fragaria vesca HOM05D000713 ORTHO05D000547 3.2e-10 69.3 99 44.4
FAN12G0064 Fragaria x ananassa HOM05D000713 ORTHO05D000547 3.2e-10 69.3 99 44.4
FAN16G0206 Fragaria x ananassa HOM05D000713 ORTHO05D000547 4.1e-10 68.9 99 44.4
DCAR_006074 Daucus carota HOM05D000713 ORTHO05D002219 9.2e-10 67.8 92 44.6
Gohir.A13G231600 Gossypium hirsutum HOM05D000713 ORTHO05D218178 1.2e-09 67.4 82 41.5
Nn2g13742 Nelumbo nucifera HOM05D000713 ORTHO05D000547 1.2e-09 67.4 127 37.0
SEGI_14955 Sequoiadendron giganteum HOM05D000713 ORTHO05D000547 1.2e-09 67.4 149 36.9
PGSC0003DMG400008101 Solanum tuberosum HOM05D000713 ORTHO05D000547 1.6e-09 67.0 115 40.9
CiPaw.13G111600 Carya illinoinensis HOM05D000713 ORTHO05D000547 2.0e-09 66.6 126 39.7
Prupe.6G105900 Prunus persica HOM05D000713 ORTHO05D000547 4.6e-09 65.5 91 46.2
Ca_01394_v3 Cicer arietinum L. HOM05D000713 ORTHO05D000547 5.9e-09 65.1 107 40.2
COL.COLO4_18295 Corchorus olitorius HOM05D000713 ORTHO05D000547 5.9e-09 65.1 88 45.5
Rhsim13G0096600 Rhododendron simsii HOM05D000713 ORTHO05D000547 5.9e-09 65.1 98 40.8
Lj3g0025609 Lotus japonicus HOM05D000713 ORTHO05D000547 1.0e-08 64.3 50 60.0
FvH4_3g31600 Fragaria vesca HOM05D000713 ORTHO05D000547 1.3e-08 63.9 100 42.0
TPR.G11616 Trifolium pratense HOM05D000713 ORTHO05D000547 1.5e-07 60.5 99 41.4
Os04g0364800 Oryza sativa ssp. japonica HOM05D000713 ORTHO05D000547 5.6e-07 58.5 115 36.5
ATR0665G360 Amborella trichopoda HOM05D000713 ORTHO05D000547 7.3e-07 58.2 125 36.0
Lj3g0001483 Lotus japonicus HOM05D000713 ORTHO05D000547 1.6e-06 57.0 94 41.5
Oeu004499.1 Olea europaea HOM05D000713 ORTHO05D000547 2.8e-06 56.2 107 35.5
MBI18_g14088_MAGBIO Magnolia biondii HOM05D000713 ORTHO05D000547 6.2e-06 55.1 130 34.6
Oeu036430.1 Olea europaea HOM05D000713 ORTHO05D000547 6.2e-06 55.1 106 36.8
Nitab4.5_0013004g0030 Nicotiana tabacum HOM05D000713 ORTHO05D000547 8.0e-06 54.7 116 38.8


User provided reference genes

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