Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 4.2e-59 231.1 112 100.0
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.8e-47 191.0 111 81.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.4e-46 189.5 111 80.2
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.1e-46 188.3 111 76.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 3.1e-46 188.3 111 80.2
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.1e-46 188.3 111 76.6
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.1e-46 188.3 110 80.0
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 3.1e-46 188.3 111 80.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.1e-46 188.0 111 76.6
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.1e-46 188.0 111 79.3
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 5.3e-46 187.6 110 80.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.9e-46 187.2 111 79.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.9e-46 187.2 111 79.3
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.0e-46 186.8 111 78.4
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.0e-46 186.8 111 78.4
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 9.0e-46 186.8 111 78.4
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 9.0e-46 186.8 111 81.1
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.5e-45 186.0 111 75.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.5e-45 186.0 110 76.4
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.5e-45 186.0 111 79.3
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.0e-45 185.7 111 78.4
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.0e-45 185.7 111 79.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.0e-45 185.7 111 79.3
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.0e-45 185.7 111 79.3
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.6e-45 185.3 111 78.4
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 2.6e-45 185.3 111 78.4
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 3.4e-45 184.9 111 76.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 3.4e-45 184.9 111 79.3
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 4.5e-45 184.5 111 78.4
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 5.9e-45 184.1 111 79.3
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 79.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 7.6e-45 183.7 111 75.7
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 74.8
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 78.4
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 78.4
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 78.4
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 7.6e-45 183.7 111 76.6
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.0e-44 183.3 111 77.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.0e-44 183.3 111 76.6
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.3e-44 183.0 111 76.6
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.3e-44 183.0 111 78.4
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.7e-44 182.6 110 77.3
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.7e-44 182.6 110 77.3
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.7e-44 182.6 110 77.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.7e-44 182.6 111 75.7
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.7e-44 182.6 111 78.4
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 2.2e-44 182.2 111 74.8
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.2e-44 182.2 111 78.4
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.2e-44 182.2 111 78.4
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 2.2e-44 182.2 111 78.4
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.8e-44 181.4 111 78.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.8e-44 181.4 111 77.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 6.5e-44 180.6 110 76.4
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 6.5e-44 180.6 111 77.5
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 8.5e-44 180.3 110 77.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 8.5e-44 180.3 111 73.9
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.1e-43 179.9 111 73.9
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.1e-43 179.9 111 74.8
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.4e-43 179.5 111 76.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.4e-43 179.5 111 75.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.9e-43 179.1 110 75.5
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.2e-43 178.3 110 75.5
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 3.2e-43 178.3 110 75.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.2e-43 178.3 110 76.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.2e-43 178.3 110 75.5
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 4.2e-43 177.9 110 74.5
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 4.2e-43 177.9 110 74.5
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 7.2e-43 177.2 111 74.8
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 7.2e-43 177.2 111 74.8
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.2e-42 176.4 111 74.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.1e-42 175.6 111 76.6
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 2.1e-42 175.6 110 75.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 3.6e-42 174.9 111 73.9
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 3.6e-42 174.9 111 73.9
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 4.6e-42 174.5 110 74.5
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 6.1e-42 174.1 110 74.5
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 6.1e-42 174.1 111 73.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 7.9e-42 173.7 111 73.9
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.0e-41 173.3 111 71.2
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.0e-41 173.3 111 69.4
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 2.3e-41 172.2 111 73.9
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.9e-41 171.4 111 71.2
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 3.9e-41 171.4 111 69.4
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 5.1e-41 171.0 111 73.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 8.7e-41 170.2 111 70.3
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-40 169.9 111 70.3
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-40 169.9 111 70.3
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 5.7e-40 167.5 110 71.8
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.7e-40 167.5 109 71.6
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 9.7e-40 166.8 150 58.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 6.3e-39 164.1 153 56.9
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 8.2e-39 163.7 143 60.1
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.1e-38 163.3 110 70.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.1e-38 161.4 98 77.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 2.6e-37 158.7 100 70.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.3e-36 156.4 84 85.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.7e-36 156.0 98 75.5
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.2e-36 155.6 96 77.1
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 6.5e-36 154.1 111 65.8
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-35 152.1 98 73.5
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 9.4e-35 150.2 107 62.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 3.6e-34 148.3 90 78.9
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.4e-33 146.4 84 79.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.0e-33 145.2 91 74.7
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 9.7e-32 140.2 111 60.4
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.1e-30 136.7 90 71.1
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.4e-30 135.6 89 73.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 3.1e-30 135.2 91 71.4
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 7.7e-29 130.6 111 59.5
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.3e-28 129.8 96 64.6
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.9e-27 125.9 110 55.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.2e-26 123.2 111 54.1
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 3.6e-26 121.7 119 57.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 4.7e-26 121.3 111 52.3
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.1e-26 120.9 66 86.4
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.3e-24 115.2 79 69.6
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.3e-23 113.2 64 78.1
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 4.1e-22 108.2 78 71.8
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 7.2e-19 97.4 84 57.1
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.1e-18 94.4 70 58.6
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 6.1e-18 94.4 57 75.4
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.4e-17 93.2 68 64.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.3e-17 92.4 64 70.3
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 7.5e-16 87.4 58 72.4
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.4e-14 83.2 59 69.5
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-14 82.8 59 69.5
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 2.4e-14 82.4 91 46.2
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-14 82.0 57 70.2
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.0e-13 79.3 70 60.0
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.5e-11 73.2 95 42.1
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.5e-11 72.4 94 43.6
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.5e-11 72.4 58 58.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.2e-11 70.9 45 75.6
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 6.1e-10 67.8 121 35.5


User provided reference genes

Program Settings