Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.2e-67 259.6 127 100.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 3.2e-55 218.4 121 84.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.7e-53 210.3 122 78.7
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.9e-52 209.1 122 79.5
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 4.3e-52 208.0 121 78.5
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 5.6e-52 207.6 121 81.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.3e-52 207.2 119 79.8
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 7.3e-52 207.2 120 80.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.6e-51 206.1 121 77.7
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.6e-51 206.1 121 77.7
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.6e-51 206.1 121 77.7
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.1e-51 205.7 121 76.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.1e-51 205.7 121 76.0
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.8e-51 205.3 121 77.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.7e-51 204.5 121 76.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 8.1e-51 203.8 121 74.4
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.4e-50 203.0 121 76.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.4e-50 203.0 121 74.4
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.4e-50 202.2 122 73.8
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.0e-50 201.4 121 73.6
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 6.9e-50 200.7 121 76.9
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.9e-50 200.7 122 75.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 9.0e-50 200.3 121 76.9
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 9.0e-50 200.3 119 77.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 9.0e-50 200.3 123 73.2
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 9.0e-50 200.3 122 73.8
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.5e-49 199.5 123 72.4
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.6e-49 198.7 121 75.2
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.8e-49 197.6 123 71.5
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.3e-48 196.4 121 75.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.7e-48 196.1 121 74.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.7e-48 196.1 121 71.9
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.2e-48 195.7 122 73.8
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.2e-48 195.7 121 74.4
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.2e-48 195.7 121 74.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.2e-48 195.7 121 73.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.2e-48 195.7 119 74.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.9e-48 195.3 123 70.7
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.9e-48 194.5 122 73.0
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 6.4e-48 194.1 120 70.8
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.1e-47 193.4 124 68.5
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.4e-47 193.0 122 69.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.4e-47 193.0 121 73.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.4e-47 193.0 121 69.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.4e-47 193.0 121 73.6
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.4e-47 192.2 121 72.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.2e-47 191.8 122 70.5
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 3.2e-47 191.8 121 71.9
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 4.2e-47 191.4 120 70.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 7.1e-47 190.7 121 71.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 7.1e-47 190.7 122 70.5
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 9.3e-47 190.3 120 70.0
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-46 189.9 121 71.1
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.2e-46 189.9 122 70.5
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.2e-46 189.9 121 72.7
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.6e-46 189.5 121 70.2
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.7e-46 188.7 121 70.2
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.7e-46 188.7 122 69.7
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.5e-46 188.3 120 75.8
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 4.6e-46 188.0 122 70.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.6e-46 188.0 119 68.9
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 7.8e-46 187.2 121 69.4
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 7.8e-46 187.2 122 68.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 7.8e-46 187.2 123 68.3
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 7.8e-46 187.2 120 70.0
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.0e-45 186.8 121 70.2
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.3e-45 186.4 122 71.3
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.7e-45 186.0 120 72.5
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.3e-45 185.7 121 68.6
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 3.0e-45 185.3 121 72.7
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.9e-45 184.9 121 69.4
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.6e-45 184.1 122 72.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 6.6e-45 184.1 121 67.8
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 6.6e-45 184.1 121 67.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 6.6e-45 184.1 121 67.8
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 6.6e-45 184.1 121 67.8
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 6.6e-45 184.1 121 67.8
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 8.7e-45 183.7 121 68.6
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 8.7e-45 183.7 121 67.8
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.3e-44 181.8 121 66.9
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.3e-44 181.8 121 66.9
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.3e-44 181.8 121 66.9
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.3e-44 181.4 121 68.6
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 4.3e-44 181.4 119 70.6
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 5.6e-44 181.0 121 71.9
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.3e-43 179.9 118 68.6
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.3e-43 179.9 120 67.5
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.1e-43 179.1 139 61.9
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.8e-43 178.7 121 69.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.8e-43 178.7 121 67.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 3.6e-43 178.3 119 68.1
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 6.2e-43 177.6 120 67.5
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 6.2e-43 177.6 120 67.5
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.4e-42 176.4 119 66.4
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.1e-42 175.3 120 66.7
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.0e-41 172.6 121 64.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 4.5e-41 171.4 119 69.7
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 7.6e-41 170.6 120 66.7
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.7e-40 169.5 111 71.2
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.7e-40 169.5 119 68.1
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.7e-40 169.5 119 68.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.2e-40 169.1 121 63.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 4.9e-40 167.9 122 65.6
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.1e-38 162.5 191 46.6
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.7e-38 162.2 119 63.9
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.6e-38 161.4 119 63.9
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.6e-38 161.4 119 63.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.0e-37 160.2 205 41.5
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.3e-37 159.8 115 67.0
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.3e-37 159.1 116 63.8
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 5.1e-37 157.9 102 72.5
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.3e-35 153.3 121 56.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 3.1e-34 148.7 121 53.7
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 6.9e-34 147.5 121 52.9
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.6e-33 145.6 119 58.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.9e-32 142.1 121 53.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 8.4e-32 140.6 81 81.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-31 139.0 120 53.3
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 9.3e-31 137.1 81 76.5
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 9.3e-31 137.1 82 78.0
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-29 132.5 117 50.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 8.7e-29 130.6 117 50.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-28 128.6 117 49.6
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.3e-27 126.7 85 68.2
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-27 126.3 106 53.8
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 4.0e-26 121.7 120 46.7
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 4.0e-26 121.7 120 45.8
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 5.8e-25 117.9 118 44.9
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 3.8e-24 115.2 122 42.6
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 3.8e-24 115.2 123 42.3
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-23 113.6 101 50.5
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.5e-23 112.5 74 70.3
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 3.0e-21 105.5 74 67.6
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 6.7e-21 104.4 162 37.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.1e-20 103.6 107 43.9
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.3e-19 100.1 106 41.5
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 6.9e-18 94.4 85 52.9
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 5.5e-15 84.7 121 33.9
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.4e-13 80.1 121 31.4
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 8.8e-13 77.4 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 6.3e-11 71.2 108 33.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.0e-08 63.9 39 66.7
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 1.6e-06 56.6 37 67.6
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 4.7e-06 55.1 38 63.2


User provided reference genes

Program Settings