Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2E223T1 Lonicera japonica HOM05D003145 ORTHO05D003586 7.8e-43 176.8 93 100.0
Dinv21655 Davidia involucrata HOM05D003145 ORTHO05D003586 3.0e-18 95.1 103 57.3
DCAR_004968 Daucus carota HOM05D003145 ORTHO05D003586 6.6e-18 94.0 101 57.4
Rhsim07G0110700 Rhododendron simsii HOM05D003145 ORTHO05D003586 4.0e-15 84.7 105 52.4
TAR374G0068 Trochodendron aralioides HOM05D003145 ORTHO05D003586 7.6e-14 80.5 102 55.9
CSS0016680 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 8.4e-13 77.0 107 51.4
CSS0017778 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 8.4e-13 77.0 107 51.4
Ciclev10004301m.g Citrus clementina HOM05D003145 ORTHO05D003586 1.1e-12 76.6 105 47.6
Dinv06577 Davidia involucrata HOM05D003145 ORTHO05D003586 1.4e-12 76.3 106 53.8
TAR503G0001 Trochodendron aralioides HOM05D003145 ORTHO05D003586 2.4e-12 75.5 103 53.4
TAR629G0158 Trochodendron aralioides HOM05D003145 ORTHO05D003586 2.4e-12 75.5 103 53.4
MBI19_g34824_MAGBIO Magnolia biondii HOM05D003145 ORTHO05D003586 9.3e-12 73.6 101 52.5
Rhsim11G0006900 Rhododendron simsii HOM05D003145 ORTHO05D003586 2.1e-11 72.4 106 48.1
Nn1g00938 Nelumbo nucifera HOM05D003145 ORTHO05D003586 3.5e-11 71.6 92 52.2
Potri.001G126400 Populus trichocarpa HOM05D003145 ORTHO05D003586 4.6e-11 71.2 93 49.5
Gohir.D09G250000 Gossypium hirsutum HOM05D003145 ORTHO05D003586 3.0e-10 68.6 109 45.9
Cfa012923 Carpinus fangiana HOM05D003145 ORTHO05D003586 5.1e-10 67.8 86 53.5
HanXRQChr17g0549361 Helianthus annuus HOM05D003145 ORTHO05D003586 8.7e-10 67.0 101 45.5
Hma1.2p1_1132F.1_g260190 Hydrangea macrophylla HOM05D003145 ORTHO05D003586 1.1e-09 66.6 103 47.6
MBI04_g33337_MAGBIO Magnolia biondii HOM05D003145 ORTHO05D003586 1.1e-09 66.6 93 51.6
QL07p001538 Quercus lobata HOM05D003145 ORTHO05D003586 1.1e-09 66.6 105 45.7
CSS0050372 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.5e-09 66.2 73 56.2
Haze_21280 Corylus avellana HOM05D003145 ORTHO05D003586 1.5e-09 66.2 100 48.0
Gorai.006G274400 Gossypium raimondii HOM05D003145 ORTHO05D003586 1.5e-09 66.2 107 45.8
unitig_85.g27171 Utricularia gibba HOM05D003145 ORTHO05D003586 1.5e-09 66.2 72 54.2
Atru.chr1.828 Acer truncatum HOM05D003145 ORTHO05D003586 1.9e-09 65.9 99 46.5
MD07G1251300 Malus domestica HOM05D003145 ORTHO05D003586 1.9e-09 65.9 109 44.0
RcHm_v2.0_Chr1g0374011 Rosa chinensis HOM05D003145 ORTHO05D003586 4.3e-09 64.7 102 49.0
vmacro14067 Vaccinium macrocarpon HOM05D003145 ORTHO05D003586 4.3e-09 64.7 106 47.2
Aqoxy5G03819 Aquilegia oxysepala HOM05D003145 ORTHO05D003586 7.3e-09 63.9 96 52.1
Manes.06G040900 Manihot esculenta HOM05D003145 ORTHO05D003586 7.3e-09 63.9 105 44.8
MSTRG.134 Avicennia marina HOM05D003145 ORTHO05D003586 9.6e-09 63.5 98 48.0
MSTRG.14113 Avicennia marina HOM05D003145 ORTHO05D003586 9.6e-09 63.5 98 48.0
Sabra01G0097500 Salix brachista HOM05D003145 ORTHO05D003586 9.6e-09 63.5 95 48.4
Gohir.A09G249100 Gossypium hirsutum HOM05D003145 ORTHO05D003586 2.8e-08 62.0 73 53.4
TWI39G0360 Tripterygium wilfordii HOM05D003145 ORTHO05D003586 3.6e-08 61.6 104 41.3
Ah.02g123120 Amaranthus hybridus HOM05D003145 ORTHO05D003586 4.8e-08 61.2 100 44.0
vmacro00005 Vaccinium macrocarpon HOM05D003145 ORTHO05D003586 4.8e-08 61.2 48 58.3
Thecc.03G152600 Theobroma cacao HOM05D003145 ORTHO05D003586 6.2e-08 60.8 107 43.9
Hund03591 Selenicereus undatus HOM05D003145 ORTHO05D003586 1.1e-07 60.1 66 60.6
TWI23G0972 Tripterygium wilfordii HOM05D003145 ORTHO05D003586 1.4e-07 59.7 105 41.0
Oeu042538.1 Olea europaea HOM05D003145 ORTHO05D003586 1.8e-07 59.3 100 45.0
Sc03g0004080 Simmondsia chinensis HOM05D003145 ORTHO05D003586 1.8e-07 59.3 104 46.2
Prupe.2G275100 Prunus persica HOM05D003145 ORTHO05D003586 2.4e-07 58.9 106 43.4
Migut.F01191 Erythranthe guttata HOM05D003145 ORTHO05D003586 4.0e-07 58.2 103 41.7
CiPaw.08G001500 Carya illinoinensis HOM05D003145 ORTHO05D003586 9.0e-07 57.0 106 46.2
Sabra03G0074000 Salix brachista HOM05D003145 ORTHO05D003586 1.2e-06 56.6 97 45.4
PGR042G0077 Punica granatum HOM05D003145 ORTHO05D003586 1.5e-06 56.2 112 40.2
RcHm_v2.0_Chr2g0137831 Rosa chinensis HOM05D003145 ORTHO05D003586 2.6e-06 55.5 100 42.0
Hma1.2p1_0316F.1_g122870 Hydrangea macrophylla HOM05D003145 ORTHO05D003586 3.4e-06 55.1 106 40.6
CAN.G485.1 Capsicum annuum HOM05D003145 ORTHO05D003586 4.4e-06 54.7 102 41.2
Cc02_g04460 Coffea canephora HOM05D003145 ORTHO05D003586 4.4e-06 54.7 98 45.9
Lsat_1_v5_gn_3_1241 Lactuca sativa HOM05D003145 ORTHO05D003586 5.8e-06 54.3 62 50.0
MD01G1181200 Malus domestica HOM05D003145 ORTHO05D003586 5.8e-06 54.3 109 41.3
Sopen05g030550 Solanum pennellii HOM05D003145 ORTHO05D003586 7.6e-06 53.9 108 40.7
Nitab4.5_0002211g0070 Nicotiana tabacum HOM05D003145 ORTHO05D003586 9.9e-06 53.5 109 39.4
Peaxi162Scf00271g00086 Petunia axillaris HOM05D003145 ORTHO05D003586 9.9e-06 53.5 71 47.9


User provided reference genes

Program Settings