Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2E159T0 Lonicera japonica HOM05D002865 ORTHO05D003289 2.8e-51 204.9 99 100.0
Dinv03435 Davidia involucrata HOM05D002865 ORTHO05D003289 7.3e-31 137.1 99 64.6
CSS0036805 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 3.0e-29 131.7 99 64.6
GSVIVG01019622001 Vitis vinifera HOM05D002865 ORTHO05D003289 4.0e-29 131.3 99 65.7
TAR374G1250 Trochodendron aralioides HOM05D002865 ORTHO05D003289 9.8e-28 126.7 99 59.6
Actinidia22193 Actinidia chinensis HOM05D002865 ORTHO05D003289 2.2e-27 125.6 99 64.6
Hma1.2p1_0456F.1_g156480 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 2.9e-27 125.2 99 60.6
Duzib084G0225 Durio zibethinus HOM05D002865 ORTHO05D003289 4.1e-26 121.3 99 62.6
Gohir.A12G238800 Gossypium hirsutum HOM05D002865 ORTHO05D003289 5.4e-26 120.9 99 60.6
Rhsim02G0250100 Rhododendron simsii HOM05D002865 ORTHO05D003289 7.0e-26 120.6 99 62.6
Gohir.D12G239900 Gossypium hirsutum HOM05D002865 ORTHO05D003289 4.6e-25 117.9 99 59.6
Gorai.008G257000 Gossypium raimondii HOM05D002865 ORTHO05D003289 4.6e-25 117.9 99 59.6
QL02p028873 Quercus lobata HOM05D002865 ORTHO05D003289 4.6e-25 117.9 99 56.6
Manes.10G065100 Manihot esculenta HOM05D002865 ORTHO05D003289 7.8e-25 117.1 99 57.6
Thecc.03G224100 Theobroma cacao HOM05D002865 ORTHO05D003289 7.8e-25 117.1 99 62.6
COL.COLO4_10768 Corchorus olitorius HOM05D002865 ORTHO05D003289 1.7e-24 115.9 99 60.6
Prupe.5G127000 Prunus persica HOM05D002865 ORTHO05D003289 1.7e-24 115.9 99 53.5
Atru.chr9.1914 Acer truncatum HOM05D002865 ORTHO05D003289 5.0e-24 114.4 91 60.4
Duzib205G0689 Durio zibethinus HOM05D002865 ORTHO05D003289 6.6e-24 114.0 99 61.6
MD14G1135500 Malus domestica HOM05D002865 ORTHO05D003289 1.9e-23 112.5 99 52.5
Cc08_g16580 Coffea canephora HOM05D002865 ORTHO05D003289 4.3e-23 111.3 90 58.9
HanXRQChr17g0534361 Helianthus annuus HOM05D002865 ORTHO05D003289 9.5e-23 110.2 87 60.9
Haze_09131 Corylus avellana HOM05D002865 ORTHO05D003289 1.2e-22 109.8 99 54.5
CiPaw.12G079100 Carya illinoinensis HOM05D002865 ORTHO05D003289 2.8e-22 108.6 99 53.5
MD06G1114200 Malus domestica HOM05D002865 ORTHO05D003289 3.6e-22 108.2 99 50.5
Aqoxy7G00042 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 1.4e-21 106.3 97 54.6
Potri.001G086100 Populus trichocarpa HOM05D002865 ORTHO05D003289 2.3e-21 105.5 91 56.0
Sabra01G0062400 Salix brachista HOM05D002865 ORTHO05D003289 2.3e-21 105.5 99 53.5
RcHm_v2.0_Chr7g0186491 Rosa chinensis HOM05D002865 ORTHO05D003289 3.1e-21 105.1 99 50.5
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 5.2e-21 104.4 99 55.6
DCAR_006495 Daucus carota HOM05D002865 ORTHO05D003289 5.2e-21 104.4 87 55.2
ECA246G1766 Erigeron canadensis HOM05D002865 ORTHO05D003289 8.9e-21 103.6 93 55.9
MBI04_g36400_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 8.9e-21 103.6 106 52.8
FvH4_4g07840 Fragaria vesca HOM05D002865 ORTHO05D003289 2.6e-20 102.1 99 49.5
FAN12G2865 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.6e-20 102.1 99 49.5
Ah.07g197790 Amaranthus hybridus HOM05D002865 ORTHO05D003289 3.4e-20 101.7 100 50.0
FAN17G1400 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.4e-20 101.7 99 49.5
FAN22G2270 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.4e-20 101.7 99 48.5
FvH4_5g11380 Fragaria vesca HOM05D002865 ORTHO05D003289 5.8e-20 100.9 99 49.5
FAN18G0892 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.8e-20 100.9 99 49.5
Eucgr.D01699 Eucalyptus grandis HOM05D002865 ORTHO05D003289 7.5e-20 100.5 87 57.5
CANSAT21G1641 Cannabis sativa HOM05D002865 ORTHO05D003289 1.7e-19 99.4 100 47.0
FAN07G0927 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.7e-19 98.2 99 47.5
Oeu013551.1 Olea europaea HOM05D002865 ORTHO05D003289 6.4e-19 97.4 95 47.4
PSO782G0568 Papaver somniferum HOM05D002865 ORTHO05D003289 3.2e-18 95.1 96 55.2
Sc01g0005360 Simmondsia chinensis HOM05D002865 ORTHO05D003289 7.0e-18 94.0 98 45.9
MBI12_g10424_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 1.2e-17 93.2 96 44.8
PSO063G4504 Papaver somniferum HOM05D002865 ORTHO05D003289 2.7e-17 92.0 96 54.2
Sc01g0010530 Simmondsia chinensis HOM05D002865 ORTHO05D003289 2.3e-16 89.0 86 47.7
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 3.0e-16 88.6 98 44.9
THA.LOC104816643 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 3.9e-16 88.2 98 45.9
AUR62007031 Chenopodium quinoa HOM05D002865 ORTHO05D003289 5.0e-16 87.8 100 46.0
Potri.006G202900 Populus trichocarpa HOM05D002865 ORTHO05D003289 5.0e-16 87.8 101 46.5
AUR62019895 Chenopodium quinoa HOM05D002865 ORTHO05D003289 8.6e-16 87.0 100 43.0
COL.COLO4_29569 Corchorus olitorius HOM05D002865 ORTHO05D003289 1.5e-15 86.3 97 45.4
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 1.5e-15 86.3 97 45.4
Ciclev10011740m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.9e-15 85.9 97 45.4
Duzib093G2181 Durio zibethinus HOM05D002865 ORTHO05D003289 1.9e-15 85.9 95 45.3
Gohir.A04G057700 Gossypium hirsutum HOM05D002865 ORTHO05D003289 1.9e-15 85.9 97 45.4
Gohir.D04G091500 Gossypium hirsutum HOM05D002865 ORTHO05D003289 1.9e-15 85.9 97 45.4
Gorai.009G396800 Gossypium raimondii HOM05D002865 ORTHO05D003289 1.9e-15 85.9 97 45.4
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 1.9e-15 85.9 97 44.3
Thecc.05G105100 Theobroma cacao HOM05D002865 ORTHO05D003289 5.6e-15 84.3 97 44.3
Cc06_g06610 Coffea canephora HOM05D002865 ORTHO05D003289 7.3e-15 84.0 96 45.8
PSO339G0847 Papaver somniferum HOM05D002865 ORTHO05D003289 1.2e-14 83.2 95 43.2
Sabra06G0156000 Salix brachista HOM05D002865 ORTHO05D003289 1.2e-14 83.2 97 46.4
Atru.chr8.1349 Acer truncatum HOM05D002865 ORTHO05D003289 1.6e-14 82.8 97 43.3
Prupe.7G094200 Prunus persica HOM05D002865 ORTHO05D003289 1.6e-14 82.8 95 43.2
Mapoly0850s0001 Marchantia polymorpha HOM05D002865 ORTHO05D003289 3.6e-14 81.6 95 44.2
PSO384G1255 Papaver somniferum HOM05D002865 ORTHO05D003289 3.6e-14 81.6 95 43.2
GSVIVG01011145001 Vitis vinifera HOM05D002865 ORTHO05D003289 6.2e-14 80.9 97 42.3
EL10Ac5g12463 Beta vulgaris HOM05D002865 ORTHO05D003289 1.1e-13 80.1 100 44.0
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 1.1e-13 80.1 97 44.3
Aqoxy1G00651 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 1.4e-13 79.7 95 41.1
FvH4_6g20360 Fragaria vesca HOM05D002865 ORTHO05D003289 1.4e-13 79.7 97 42.3
FAN14G2618 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.4e-13 79.7 97 42.3
Sed0026465 Sechium edule HOM05D002865 ORTHO05D003289 1.4e-13 79.7 95 44.2
Hund14962 Selenicereus undatus HOM05D002865 ORTHO05D003289 1.4e-13 79.7 95 43.2
Dinv12341 Davidia involucrata HOM05D002865 ORTHO05D003289 1.8e-13 79.3 98 42.9
FAN05G2473 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.8e-13 79.3 97 42.3
FAN05G2646 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.8e-13 79.3 97 42.3
FAN09G3527 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.8e-13 79.3 97 42.3
SEGI_32450 Sequoiadendron giganteum HOM05D002865 ORTHO05D003289 1.8e-13 79.3 94 42.6
AUR62036371 Chenopodium quinoa HOM05D002865 ORTHO05D003289 2.3e-13 79.0 97 39.2
Glyma.19G199400 Glycine max HOM05D002865 ORTHO05D003289 2.3e-13 79.0 93 41.9
Lj1g0018446 Lotus japonicus HOM05D002865 ORTHO05D003289 2.3e-13 79.0 95 42.1
BcaB04g19249 Brassica carinata HOM05D000005 ORTHO05D000449 3.1e-13 78.6 102 42.2
Glyma.03G202400 Glycine max HOM05D002865 ORTHO05D003289 3.1e-13 78.6 95 41.1
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 3.1e-13 78.6 97 42.3
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 3.1e-13 78.6 97 42.3
Sp3g04550 Schrenkiella parvula HOM05D002865 ORTHO05D003289 3.1e-13 78.6 84 47.6
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 4.0e-13 78.2 87 44.8
AL3G16330 Arabidopsis lyrata HOM05D002865 ORTHO05D003289 5.2e-13 77.8 84 47.6
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 5.2e-13 77.8 80 48.8
CANSAT64G2938 Cannabis sativa HOM05D002865 ORTHO05D003289 5.2e-13 77.8 98 40.8
AUR62030731 Chenopodium quinoa HOM05D002865 ORTHO05D003289 5.2e-13 77.8 97 39.2
TAR369G0763 Trochodendron aralioides HOM05D002865 ORTHO05D003289 5.2e-13 77.8 97 42.3
EL10Ac5g12973 Beta vulgaris HOM05D002865 ORTHO05D003289 6.8e-13 77.4 108 38.9
CDE04G0085 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 6.8e-13 77.4 106 39.6
ECA233G4705 Erigeron canadensis HOM05D002865 ORTHO05D003289 6.8e-13 77.4 97 40.2
FAN02G0504 Fragaria x ananassa HOM05D002865 ORTHO05D003289 6.8e-13 77.4 97 41.2
Os06g0129200 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 6.8e-13 77.4 90 42.2
AT3G05675 Arabidopsis thaliana HOM05D002865 ORTHO05D003289 1.2e-12 76.6 84 46.4
CARHR080120 Cardamine hirsuta HOM05D002865 ORTHO05D003289 1.2e-12 76.6 84 46.4
Haze_20175 Corylus avellana HOM05D002865 ORTHO05D003289 1.2e-12 76.6 97 41.2
MELO3C008785.2 Cucumis melo HOM05D002865 ORTHO05D003289 1.2e-12 76.6 96 41.7
Thhalv10020747m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 1.2e-12 76.6 84 46.4
Nn6g34682 Nelumbo nucifera HOM05D002865 ORTHO05D003289 1.2e-12 76.6 95 43.2
QL07p036606 Quercus lobata HOM05D002865 ORTHO05D003289 1.2e-12 76.6 98 40.8
MSTRG.26606 Avicennia marina HOM05D002865 ORTHO05D003289 1.5e-12 76.3 96 40.6
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 1.5e-12 76.3 81 48.1
CsaV3_4G013470 Cucumis sativus L. HOM05D002865 ORTHO05D003289 1.5e-12 76.3 96 41.7
HanXRQChr17g0534481 Helianthus annuus HOM05D002865 ORTHO05D003289 1.5e-12 76.3 87 50.6
Aa31LG5G16090 Aethionema arabicum HOM05D002865 ORTHO05D003289 2.0e-12 75.9 101 39.6
CiPaw.10G018000 Carya illinoinensis HOM05D002865 ORTHO05D003289 2.0e-12 75.9 98 40.8
ClCG04G005150 Citrullus lanatus HOM05D002865 ORTHO05D003289 2.0e-12 75.9 99 42.4
Migut.L01829 Erythranthe guttata HOM05D002865 ORTHO05D003289 2.0e-12 75.9 105 37.1
Zm00001eb378460 Zea mays HOM05D002865 ORTHO05D003289 2.6e-12 75.5 89 42.7
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 3.4e-12 75.1 81 46.9
BolC3t16448H Brassica oleracea HOM05D002865 ORTHO05D003289 3.4e-12 75.1 81 46.9
Lalb_Chr01g0017861 Lupinus albus HOM05D002865 ORTHO05D003289 3.4e-12 75.1 95 40.0
ATR0757G155 Amborella trichopoda HOM05D002865 ORTHO05D003289 4.4e-12 74.7 95 44.2
Carub.0003s0501 Capsella rubella HOM05D002865 ORTHO05D003289 4.4e-12 74.7 84 45.2
Cpa.g.sc104.26 Carica papaya HOM05D002865 ORTHO05D003289 4.4e-12 74.7 85 42.4
Haze_20179 Corylus avellana HOM05D002865 ORTHO05D003289 4.4e-12 74.7 96 39.6
Eucgr.A02587 Eucalyptus grandis HOM05D002865 ORTHO05D003289 4.4e-12 74.7 93 39.8
Pp3c23_20080 Physcomitrium patens HOM05D002865 ORTHO05D003289 4.4e-12 74.7 98 42.9
Medtr7g106330 Medicago truncatula HOM05D002865 ORTHO05D003289 5.8e-12 74.3 95 40.0
Ca_09060_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 7.5e-12 73.9 95 40.0
TPR.G31298 Trifolium pratense HOM05D002865 ORTHO05D003289 7.5e-12 73.9 95 38.9
CSS0009458 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 9.9e-12 73.6 81 44.4
HanXRQChr02g0053241 Helianthus annuus HOM05D002865 ORTHO05D003289 9.9e-12 73.6 94 38.3
Nitab4.5_0000077g0070 Nicotiana tabacum HOM05D002865 ORTHO05D003289 9.9e-12 73.6 90 42.2
Nitab4.5_0000384g0010 Nicotiana tabacum HOM05D002865 ORTHO05D003289 9.9e-12 73.6 90 42.2
Pp3c24_16440 Physcomitrium patens HOM05D002865 ORTHO05D003289 1.3e-11 73.2 98 42.9
vmacro12836 Vaccinium macrocarpon HOM05D002865 ORTHO05D003289 1.7e-11 72.8 81 43.2
HPP92_022373 Vanilla planifolia HOM05D002865 ORTHO05D003289 1.7e-11 72.8 93 43.0
CAN.G574.4 Capsicum annuum HOM05D002865 ORTHO05D003289 2.2e-11 72.4 87 42.5
Lsat_1_v5_gn_6_33500 Lactuca sativa HOM05D002865 ORTHO05D003289 2.2e-11 72.4 82 42.7
PGSC0003DMG400021355 Solanum tuberosum HOM05D002865 ORTHO05D003289 2.2e-11 72.4 87 43.7
VMungo1383G3695 Vigna mungo HOM05D002865 ORTHO05D003289 2.2e-11 72.4 95 38.9
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 2.9e-11 72.0 95 42.1
Solyc01g007060.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 3.7e-11 71.6 87 42.5
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 4.9e-11 71.2 84 42.9
arahy.Tifrunner.gnm1.ann1.0FNG65 Arachis hypogaea HOM05D002865 ORTHO05D003289 6.4e-11 70.9 95 37.9
Peaxi162Scf00910g00220 Petunia axillaris HOM05D002865 ORTHO05D003289 6.4e-11 70.9 91 41.8
Sopen01g003040 Solanum pennellii HOM05D002865 ORTHO05D003289 6.4e-11 70.9 87 42.5
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 8.3e-11 70.5 95 41.1
HPP92_000996 Vanilla planifolia HOM05D002865 ORTHO05D003289 1.1e-10 70.1 102 37.3
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 2.4e-10 68.9 77 42.9
SGA_v2.0_scaffold35G14017 Striga asiatica HOM05D002865 ORTHO05D003289 2.4e-10 68.9 87 39.1
Psat3g028440 Pisum sativum HOM05D002865 ORTHO05D003289 3.2e-10 68.6 94 36.2
Pp3c8_21540 Physcomitrium patens HOM05D002865 ORTHO05D003289 3.5e-09 65.1 96 38.5
unitig_8.g4977 Utricularia gibba HOM05D002865 ORTHO05D003289 7.8e-09 63.9 81 37.0
Os07g0668800 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 1.3e-08 63.2 87 43.7
FAN08G2803 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.7e-08 62.8 57 43.9
Phvul.001G195900 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 2.3e-08 62.4 72 43.1
CDE02G3339 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 8.6e-08 60.5 78 42.3
Pp3c20_1690 Physcomitrium patens HOM05D002865 ORTHO05D003289 3.3e-07 58.5 96 36.5


User provided reference genes

Program Settings