Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 4.9e-117 424.5 213 100.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 3.8e-77 292.0 215 72.6
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.8e-66 256.5 218 67.9
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.0e-62 243.0 217 63.1
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.0e-61 238.4 221 61.1
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 7.2e-60 234.6 215 61.9
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-58 230.7 220 60.0
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 3.0e-58 229.2 219 59.4
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.8e-56 221.9 222 58.1
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 6.3e-56 221.5 217 59.9
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 6.3e-56 221.5 219 58.4
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.8e-55 219.9 228 58.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 4.1e-55 218.8 225 57.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.0e-55 218.0 222 59.9
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.0e-54 216.5 224 58.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.5e-54 215.3 216 60.2
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 7.7e-54 214.5 215 57.7
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.7e-53 213.4 224 57.6
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.2e-53 213.0 226 59.3
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.9e-53 212.6 233 57.1
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 2.9e-53 212.6 216 58.8
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.9e-53 212.6 212 61.3
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.0e-53 211.8 218 58.3
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.0e-53 211.8 215 61.4
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.5e-53 211.5 218 58.7
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 6.5e-53 211.5 214 59.8
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.5e-52 209.5 217 58.5
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 3.2e-52 209.1 219 57.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.2e-52 208.8 218 57.8
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 4.2e-52 208.8 230 59.6
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 5.5e-52 208.4 217 56.7
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.2e-52 208.0 218 57.8
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 9.4e-52 207.6 226 57.1
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 9.4e-52 207.6 212 58.0
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.6e-51 206.8 217 56.7
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.1e-51 206.5 217 56.2
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.1e-51 206.5 225 55.6
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 3.6e-51 205.7 226 55.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.7e-51 205.3 231 54.1
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.1e-51 204.9 209 55.0
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.0e-50 204.1 216 60.2
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.4e-50 203.8 224 57.1
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-50 203.8 225 55.1
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.8e-50 203.4 226 54.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.8e-50 203.4 226 58.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.8e-50 203.4 230 55.2
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.3e-50 203.0 231 54.1
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.0e-50 202.6 235 54.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 4.0e-50 202.2 222 52.7
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.0e-50 202.2 226 55.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 6.7e-50 201.4 219 52.5
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 6.7e-50 201.4 226 53.5
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 4.4e-49 198.7 217 56.2
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 7.5e-49 198.0 228 54.8
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.3e-48 197.2 228 54.8
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.8e-48 196.1 220 54.1
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.8e-48 196.1 218 50.9
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 6.3e-48 194.9 217 51.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 8.2e-48 194.5 219 51.6
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-47 193.7 181 58.0
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.4e-47 193.7 222 56.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.8e-47 193.4 216 56.0
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 3.1e-47 192.6 249 49.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 3.1e-47 192.6 217 56.7
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 3.1e-47 192.6 219 53.4
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 4.1e-47 192.2 215 52.1
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 4.1e-47 192.2 219 50.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 4.1e-47 192.2 227 55.9
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 4.1e-47 192.2 229 52.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.7e-46 189.5 217 52.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.7e-46 189.5 209 53.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.7e-46 188.0 212 53.3
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 7.7e-46 188.0 215 56.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.7e-45 186.8 218 49.1
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.9e-45 186.0 221 52.9
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.5e-45 184.5 209 52.6
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-44 184.1 213 52.6
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-44 183.7 213 52.1
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.9e-44 183.3 242 50.4
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 3.2e-44 182.6 218 55.0
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 4.2e-44 182.2 213 54.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 9.4e-44 181.0 218 54.6
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.6e-43 180.3 215 52.1
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 2.1e-43 179.9 220 55.0
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.1e-43 179.9 213 54.0
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.7e-43 179.5 219 48.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.6e-43 179.1 227 52.4
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 4.7e-43 178.7 222 53.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.7e-43 178.7 220 55.0
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.8e-42 176.8 238 50.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 5.2e-42 175.3 248 47.2
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 5.2e-42 175.3 222 50.5
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.8e-42 174.9 218 53.2
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.8e-42 174.5 218 50.5
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.5e-41 173.7 219 52.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.0e-41 173.3 180 54.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.6e-41 172.9 213 53.1
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 3.4e-41 172.6 222 50.9
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 4.4e-41 172.2 213 52.1
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.3e-40 170.6 220 50.0
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.7e-40 170.2 217 53.0
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.8e-40 169.5 215 49.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.8e-40 169.5 215 49.8
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 4.8e-40 168.7 184 51.1
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 4.8e-40 168.7 213 51.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.8e-40 168.7 218 49.1
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.8e-39 166.8 176 58.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 4.1e-39 165.6 220 50.0
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.0e-39 164.9 218 48.6
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 7.0e-39 164.9 209 50.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.0e-38 163.3 218 48.2
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 5.9e-38 161.8 217 48.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 5.9e-38 161.8 216 51.4
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.1e-36 157.5 222 51.4
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 7.2e-36 154.8 217 48.8
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.6e-35 153.7 217 48.8
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.1e-35 153.3 214 47.2
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 2.1e-35 153.3 225 46.2
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.7e-35 152.9 224 46.4
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.7e-35 152.9 205 51.2
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 4.7e-35 152.1 173 51.4
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 6.1e-35 151.8 216 45.4
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 6.1e-35 151.8 223 51.1
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.0e-34 151.0 215 46.5
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.8e-34 150.2 219 44.3
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 6.8e-34 148.3 209 47.8
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 8.8e-34 147.9 218 45.9
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.5e-33 147.1 193 49.2
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 9.8e-33 144.4 209 48.8
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 6.3e-32 141.7 222 43.2
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.6e-30 137.1 183 45.9
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.6e-30 137.1 223 48.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 2.7e-30 136.3 218 44.0
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.3e-29 134.0 152 49.3
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-29 133.7 217 43.3
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 7.3e-28 128.3 218 45.0
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.1e-27 126.7 286 35.3
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.7e-27 125.6 212 42.5
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 6.1e-27 125.2 214 42.5
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 6.1e-27 125.2 214 42.5
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 6.1e-27 125.2 218 43.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 4.0e-26 122.5 216 39.8
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 5.2e-26 122.1 218 39.9
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 8.9e-26 121.3 218 39.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 3.4e-25 119.4 219 42.9
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 4.4e-25 119.0 214 38.8
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.2e-24 116.7 208 39.4
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 5.4e-23 112.1 183 41.0
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 4.6e-22 109.0 285 34.0
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.9e-22 108.6 129 50.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 8.6e-21 104.8 218 40.4
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.1e-20 104.4 191 42.4
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 8.0e-19 98.2 217 38.2
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 8.9e-18 94.7 164 41.5
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 7.5e-17 91.7 220 39.1
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 9.8e-17 91.3 63 65.1
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 3.5e-14 82.8 179 38.0
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 4.6e-14 82.4 90 55.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 6.0e-14 82.0 179 39.1
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 5.0e-13 79.0 102 49.0
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 8.1e-11 71.6 98 48.0
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 5.2e-10 68.9 70 54.3
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 8.9e-10 68.2 49 63.3
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 2.2e-08 63.5 86 47.7
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 2.2e-08 63.5 104 45.2
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 3.7e-08 62.8 110 38.2
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.9e-08 62.4 61 54.1
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 8.3e-08 61.6 86 47.7
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-06 57.8 90 46.7


User provided reference genes

Program Settings