Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 7.8e-155 550.4 281 100.0
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 2.6e-89 332.8 391 51.4
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 4.5e-86 322.0 394 49.2
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 4.5e-86 322.0 394 49.2
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 4.5e-86 322.0 394 49.2
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 1.3e-85 320.5 312 56.4
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 3.2e-84 315.8 374 49.2
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 7.2e-84 314.7 392 48.5
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 1.2e-83 313.9 391 48.1
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 8.0e-83 311.2 390 46.2
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 4.4e-81 305.4 397 46.3
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 5.7e-81 305.1 390 45.1
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.3e-80 303.9 397 46.1
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 1.7e-80 303.5 390 45.1
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 2.2e-80 303.1 393 46.1
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 2.2e-80 303.1 392 46.7
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 2.8e-80 302.8 312 56.7
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 6.3e-80 301.6 338 51.8
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 1.4e-79 300.4 391 44.8
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 1.8e-79 300.1 377 46.2
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.8e-79 300.1 390 44.6
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 5.3e-79 298.5 395 45.3
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 1.2e-78 297.4 377 45.9
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 4.5e-78 295.4 393 44.0
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 5.9e-78 295.0 393 45.3
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 1.7e-77 293.5 390 44.4
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 2.9e-77 292.7 391 44.0
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 8.5e-77 291.2 392 45.4
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 2.5e-76 289.7 391 45.0
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 2.5e-76 289.7 391 45.0
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 5.5e-76 288.5 391 44.8
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 5.5e-76 288.5 381 45.9
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 9.4e-76 287.7 395 44.3
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 3.6e-75 285.8 385 44.2
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 6.1e-75 285.0 391 45.0
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 8.0e-75 284.6 391 44.8
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 8.0e-75 284.6 392 46.4
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 8.0e-75 284.6 400 43.8
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 1.0e-74 284.3 392 43.9
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.0e-74 284.3 392 45.4
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.0e-74 282.3 393 45.3
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.0e-74 282.3 393 45.0
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.0e-74 282.3 392 44.9
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 1.5e-73 280.4 390 44.6
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 2.0e-73 280.0 390 42.6
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 3.4e-73 279.3 394 43.4
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 5.7e-73 278.5 393 44.8
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 9.8e-73 277.7 374 46.5
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 9.8e-73 277.7 390 42.3
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 2.2e-72 276.6 394 44.7
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 3.7e-72 275.8 390 43.1
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 4.8e-72 275.4 391 41.9
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 6.3e-72 275.0 396 43.2
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 1.8e-71 273.5 395 41.5
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 2.4e-71 273.1 390 43.3
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 7.0e-71 271.6 393 43.0
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 1.6e-70 270.4 384 44.5
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 1.3e-69 267.3 389 41.4
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 2.3e-69 266.5 393 43.0
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 6.5e-69 265.0 391 43.0
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 6.5e-69 265.0 391 43.0
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 6.5e-69 265.0 383 43.9
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 1.1e-68 264.2 398 41.7
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 1.5e-68 263.8 398 43.0
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 3.2e-68 262.7 395 41.3
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 7.2e-68 261.5 385 42.6
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 1.6e-67 260.4 391 42.7
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 3.6e-67 259.2 389 42.2
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 6.1e-67 258.5 391 40.2
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 5.2e-66 255.4 394 40.4
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 6.8e-66 255.0 391 40.2
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 8.9e-66 254.6 374 43.6
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 1.5e-65 253.8 395 42.8
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 2.0e-65 253.4 376 41.8
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 2.0e-65 253.4 396 40.4
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 3.4e-65 252.7 352 44.3
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 7.5e-65 251.5 327 46.5
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 2.2e-64 250.0 397 41.8
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 2.2e-64 250.0 391 40.9
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 3.7e-64 249.2 395 39.5
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 8.3e-64 248.1 391 39.4
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 1.1e-63 247.7 386 41.7
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 4.1e-63 245.7 397 40.1
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 5.4e-63 245.4 392 40.6
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 7.0e-63 245.0 391 40.7
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 1.6e-62 243.8 333 42.9
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 2.7e-62 243.0 407 39.6
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 7.8e-62 241.5 401 39.2
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 1.3e-61 240.7 394 40.1
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 2.3e-61 240.0 403 39.7
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 6.6e-61 238.4 392 40.3
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 6.6e-61 238.4 385 39.7
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.1e-60 237.7 396 38.6
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 1.9e-60 236.9 393 39.4
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 2.5e-60 236.5 390 39.7
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 3.3e-60 236.1 397 38.8
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 3.3e-60 236.1 396 39.9
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 3.3e-60 236.1 386 38.1
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 4.3e-60 235.7 403 38.7
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.2e-59 234.2 397 38.5
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 4.7e-59 232.3 340 41.2
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.8e-58 230.3 393 38.2
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 4.0e-58 229.2 395 38.2
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.5e-57 227.3 380 38.7
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 2.0e-57 226.9 393 37.2
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 6.4e-56 221.9 283 44.9
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 1.1e-55 221.1 398 37.7
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 3.2e-55 219.5 390 38.7
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 1.3e-53 214.2 398 36.7
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 3.0e-53 213.0 399 37.6
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 6.6e-53 211.8 400 36.5
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 5.6e-52 208.8 399 36.8
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 1.5e-49 200.7 397 35.3
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 9.8e-49 198.0 391 36.1
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.3e-48 197.6 391 35.5
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 1.1e-47 194.5 402 35.8
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 2.4e-47 193.4 402 35.6
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 2.4e-47 193.4 333 36.9
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 7.0e-47 191.8 402 35.3
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 6.0e-46 188.7 405 33.8
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 6.0e-46 188.7 395 34.2
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 1.0e-45 188.0 404 34.2
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 5.0e-45 185.7 395 34.9
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 8.6e-45 184.9 365 33.7
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 8.6e-45 184.9 393 34.6
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.1e-44 184.5 343 35.0
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 2.5e-44 183.3 394 34.0
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.4e-39 167.5 375 33.3
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.4e-39 166.8 375 33.3
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 5.4e-39 165.6 354 33.9
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 1.2e-38 164.5 446 30.9
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 2.4e-34 150.2 400 32.2
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 5.2e-34 149.1 282 38.3
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 1.2e-33 147.9 361 31.3
TAR369G0401 Trochodendron aralioides HOM05D003642 ORTHO05D004460 1.2e-33 147.9 160 51.9
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 1.7e-32 144.1 250 37.2
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 2.9e-32 143.3 413 28.6
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 6.4e-32 142.1 397 28.7
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 1.4e-31 141.0 128 60.9
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 9.2e-31 138.3 413 29.3
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 3.5e-30 136.3 378 29.1
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 4.6e-30 136.0 410 30.5
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 3.6e-27 126.3 74 79.7
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 4.0e-26 122.9 246 33.7
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 6.9e-26 122.1 292 29.5
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 9.0e-26 121.7 362 28.5
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 9.0e-26 121.7 74 75.7
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 9.0e-26 121.7 401 28.9
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 9.0e-26 121.7 409 28.1
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 1.5e-25 120.9 361 29.4
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 2.0e-25 120.6 72 77.8
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 2.6e-25 120.2 303 29.0
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 4.4e-25 119.4 334 28.1
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 3.8e-24 116.3 407 28.3
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 9.3e-23 111.7 74 71.6
Atru.chr3.3293 Acer truncatum HOM05D003642 ORTHO05D004460 6.0e-22 109.0 133 47.4
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 8.7e-21 105.1 72 69.4
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 4.3e-20 102.8 74 64.9
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 7.3e-20 102.1 75 66.7
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.3e-19 101.3 75 66.7
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.3e-19 101.3 294 29.9
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.4e-18 97.8 251 30.3
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 9.9e-17 91.7 135 40.0
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.2e-16 90.5 363 26.4
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 2.9e-16 90.1 253 27.3
Gorai.004G170400 Gossypium raimondii HOM05D003642 ORTHO05D047870 4.6e-14 82.8 120 44.2
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.8e-13 80.9 139 36.0
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 4.3e-12 76.3 158 34.8
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 3.7e-11 73.2 51 66.7
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 6.2e-11 72.4 68 54.4
Gohir.A08G142550 Gossypium hirsutum HOM05D003642 ORTHO05D004460 8.1e-11 72.0 120 41.7
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 2.4e-10 70.5 74 50.0
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.1e-10 70.1 342 23.1
CBR_g20295 Chara braunii HOM05D003642 ORTHO05D002554 1.1e-07 61.6 62 51.6


User provided reference genes

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