Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 4.8e-137 491.1 242 100.0
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 5.2e-123 444.5 309 76.7
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 1.1e-67 260.8 258 56.6
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 3.4e-66 255.8 262 55.0
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 5.8e-66 255.0 258 53.5
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 7.6e-66 254.6 262 55.7
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.2e-65 253.1 258 54.3
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.9e-65 252.7 244 59.0
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 8.4e-65 251.1 252 56.7
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 1.9e-64 250.0 258 53.9
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 5.5e-64 248.4 254 53.9
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 5.5e-64 248.4 258 53.1
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.6e-63 246.9 254 53.1
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.5e-63 245.7 254 53.9
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 3.5e-63 245.7 254 53.5
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 6.0e-63 245.0 258 53.1
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 5.1e-62 241.9 251 56.2
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 6.7e-62 241.5 258 51.9
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 2.5e-61 239.6 249 53.4
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 9.6e-61 237.7 254 52.0
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 8.2e-60 234.6 266 53.4
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.1e-59 234.2 257 52.5
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 9.0e-59 231.1 259 52.5
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 1.5e-58 230.3 256 52.3
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.9e-57 226.1 255 51.0
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.4e-56 223.8 243 50.2
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 2.5e-56 223.0 268 48.1
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 1.8e-54 216.9 256 48.4
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 6.7e-54 214.9 254 47.6
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.5e-53 213.8 220 57.3
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 1.3e-52 210.7 324 42.6
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 3.7e-52 209.1 329 42.9
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.1e-51 207.6 254 47.2
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.3e-49 200.7 250 46.0
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 6.1e-47 191.8 240 47.5
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 7.4e-45 184.9 326 39.6
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 3.1e-43 179.5 163 58.9
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 9.1e-43 177.9 245 44.9
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 3.8e-41 172.6 259 42.5
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 5.0e-41 172.2 173 51.4
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 3.7e-36 156.0 152 56.6
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 2.5e-32 143.3 227 39.6
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 1.6e-31 140.6 237 39.7
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 2.1e-31 140.2 235 39.6
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 1.4e-30 137.5 274 36.1
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.8e-30 137.1 237 35.4
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 1.8e-30 137.1 228 39.5
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 4.0e-30 136.0 233 39.1
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 5.2e-30 135.6 228 39.0
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 5.2e-30 135.6 236 36.4
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 5.2e-30 135.6 227 39.2
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 5.2e-30 135.6 227 39.2
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 6.7e-30 135.2 223 40.4
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 6.7e-30 135.2 223 40.4
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 8.8e-30 134.8 243 37.9
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 1.5e-29 134.0 223 39.9
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.0e-29 133.7 227 39.2
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 2.6e-29 133.3 223 39.9
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 2.6e-29 133.3 238 36.6
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 3.3e-29 132.9 235 37.4
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 7.5e-29 131.7 239 36.8
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 1.3e-28 131.0 232 37.5
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.3e-28 131.0 253 37.5
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.7e-28 130.6 235 38.3
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 1.7e-28 130.6 250 36.4
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 2.2e-28 130.2 223 40.8
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 2.2e-28 130.2 250 35.2
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 2.2e-28 130.2 250 36.0
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 2.8e-28 129.8 251 35.1
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 2.8e-28 129.8 223 39.0
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 2.8e-28 129.8 223 39.0
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 2.8e-28 129.8 220 40.0
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 3.7e-28 129.4 216 38.4
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 3.7e-28 129.4 253 36.8
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 8.2e-28 128.3 235 37.9
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 1.8e-27 127.1 257 33.5
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 2.4e-27 126.7 253 34.4
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 7.0e-27 125.2 232 38.4
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 7.0e-27 125.2 254 37.4
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 7.0e-27 125.2 235 36.6
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.6e-26 124.0 222 38.3
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.0e-26 123.6 233 37.8
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.0e-26 123.6 235 36.6
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.0e-26 123.6 237 37.1
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 2.7e-26 123.2 228 36.8
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 2.7e-26 123.2 227 38.8
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 2.7e-26 123.2 216 36.1
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 4.5e-26 122.5 223 37.2
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 7.7e-26 121.7 227 35.7
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.7e-26 121.7 235 36.6
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.0e-25 121.3 252 32.9
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.3e-25 120.9 229 34.9
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 1.7e-25 120.6 229 37.1
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.2e-25 120.2 237 33.3
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 2.2e-25 120.2 237 33.3
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 2.2e-25 120.2 216 35.6
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 2.9e-25 119.8 205 37.6
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 8.5e-25 118.2 227 37.0
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 1.1e-24 117.9 216 36.1
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.1e-24 117.9 224 35.3
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 1.1e-24 117.9 216 35.2
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.9e-24 117.1 235 37.9
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 2.5e-24 116.7 228 36.8
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.2e-24 116.3 238 35.3
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.2e-24 116.3 215 36.7
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 1.6e-23 114.0 218 38.1
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 2.7e-23 113.2 221 33.5
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.6e-23 112.8 221 35.3
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 4.7e-23 112.5 239 33.1
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 8.0e-23 111.7 218 36.2
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 8.0e-23 111.7 226 35.8
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.4e-22 110.9 261 32.6
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 2.3e-22 110.2 217 35.5
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 2.3e-22 110.2 222 37.8
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 4.0e-22 109.4 223 34.1
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 6.8e-22 108.6 221 37.6
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.5e-21 107.5 227 37.0
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 2.6e-21 106.7 150 42.7
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 3.4e-21 106.3 236 34.3
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 3.4e-21 106.3 236 34.3
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 3.4e-21 106.3 248 35.5
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 8.3e-20 101.7 216 33.8
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 8.3e-20 101.7 216 33.8
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.1e-19 101.3 216 33.3
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 1.8e-19 100.5 229 34.1
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.4e-19 100.1 216 33.3
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 2.4e-19 100.1 220 34.5
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.1e-19 99.8 243 32.5
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 3.1e-19 99.8 243 32.5
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 4.1e-19 99.4 227 34.4
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 7.0e-19 98.6 145 39.3
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 7.0e-19 98.6 215 32.1
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 1.2e-18 97.8 143 39.2
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 1.2e-18 97.8 211 35.1
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.6e-18 97.4 216 32.9
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.6e-18 97.4 216 32.9
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.6e-18 97.4 234 32.1
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 1.7e-17 94.0 220 32.7
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 2.2e-17 93.6 150 40.7
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 4.2e-16 89.4 126 38.1
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 5.5e-16 89.0 282 28.7
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 9.4e-16 88.2 204 33.8
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 6.1e-15 85.5 149 39.6
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 8.0e-15 85.1 241 31.5
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 4.0e-14 82.8 233 30.5
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 3.4e-13 79.7 177 30.5
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 4.4e-13 79.3 198 30.8
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.4e-11 74.3 109 42.2
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 2.0e-10 70.5 200 29.5
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 4.5e-10 69.3 196 33.2
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 5.9e-10 68.9 244 29.5
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 1.3e-09 67.8 196 28.1
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 6.6e-09 65.5 186 28.0
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 9.5e-08 61.6 198 25.3
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-07 60.8 195 24.6


User provided reference genes

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