Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 5.2e-201 704.1 349 100.0
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 6.2e-194 680.6 349 97.7
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.8e-138 495.7 349 73.4
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.9e-135 485.7 351 72.4
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 1.9e-134 483.0 350 72.6
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 5.2e-132 474.9 349 69.9
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.4e-131 472.2 356 69.9
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 1.8e-129 466.5 348 67.8
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 2.4e-129 466.1 348 69.8
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 9.1e-129 464.2 350 69.7
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.9e-128 461.5 348 69.0
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 7.7e-128 461.1 352 68.8
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 7.7e-128 461.1 353 68.0
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.0e-127 460.7 354 69.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.7e-127 459.9 352 67.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 3.8e-127 458.8 361 67.3
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 6.5e-127 458.0 351 68.1
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.1e-126 457.2 352 68.2
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 4.2e-126 455.3 348 68.1
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 4.2e-126 455.3 351 68.9
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 5.5e-126 454.9 351 67.2
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 7.2e-126 454.5 348 69.0
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 9.5e-126 454.1 351 67.0
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.2e-125 453.8 350 67.4
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.6e-125 452.2 349 69.1
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.7e-125 451.8 350 68.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 8.0e-125 451.1 349 68.8
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.4e-124 450.3 358 65.6
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.3e-124 449.5 347 68.3
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.3e-124 449.5 352 68.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 6.8e-124 448.0 348 67.2
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 6.8e-124 448.0 351 67.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 4.4e-123 445.3 354 66.7
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 9.8e-123 444.1 352 65.9
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 4.9e-122 441.8 351 65.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.4e-121 440.3 349 66.5
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.4e-121 440.3 351 65.8
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-121 439.9 353 67.4
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 2.4e-121 439.5 349 66.2
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.4e-121 439.5 349 65.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 3.1e-121 439.1 348 65.8
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 3.1e-121 439.1 349 65.9
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.1e-121 439.1 353 67.1
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.1e-121 439.1 354 67.2
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 3.1e-121 439.1 351 67.0
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 3.1e-121 439.1 351 65.5
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 7.0e-121 438.0 353 66.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.2e-120 437.2 349 65.6
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.2e-120 437.2 357 66.4
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.2e-120 437.2 348 67.0
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.6e-120 436.8 351 63.8
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.7e-120 436.0 350 65.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.5e-120 435.6 354 66.7
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 3.5e-120 435.6 353 65.2
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.5e-120 435.6 348 66.4
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 4.5e-120 435.3 350 65.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.0e-119 434.1 350 66.0
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.7e-119 433.3 355 66.5
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 2.3e-119 433.0 350 65.1
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.3e-119 433.0 348 65.5
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 2.9e-119 432.6 350 64.3
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.9e-119 432.6 351 65.8
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.0e-119 431.8 353 64.9
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 5.0e-119 431.8 351 67.0
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 6.6e-119 431.4 343 65.9
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.6e-119 431.0 313 70.3
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 8.6e-119 431.0 351 65.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.5e-118 430.3 346 66.5
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.5e-118 430.3 347 64.8
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.9e-118 429.9 350 64.0
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.9e-118 429.9 351 66.7
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 2.5e-118 429.5 352 63.9
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.3e-118 428.7 355 64.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 5.6e-118 428.3 348 65.2
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 9.5e-118 427.6 343 65.0
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-117 427.2 351 64.1
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.2e-117 427.2 351 64.1
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.2e-117 427.2 347 65.4
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.2e-117 427.2 346 66.2
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.2e-117 427.2 349 63.6
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 2.1e-117 426.4 347 64.8
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.1e-117 426.4 353 66.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 3.6e-117 425.6 355 63.1
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 6.1e-117 424.9 348 65.2
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 8.0e-117 424.5 347 64.8
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.0e-116 424.1 347 64.8
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.3e-116 422.9 349 63.3
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 6.8e-116 421.4 346 65.3
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.4e-115 419.1 353 62.9
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.4e-115 419.1 344 64.0
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 7.5e-115 417.9 498 49.4
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.9e-114 416.0 348 63.8
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 4.9e-114 415.2 347 63.7
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.1e-113 414.1 354 62.1
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 2.4e-113 412.9 351 62.4
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 4.1e-113 412.1 346 61.6
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 5.4e-113 411.8 352 61.9
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 4.6e-112 408.7 353 61.5
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.9e-111 405.6 388 57.2
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 9.5e-110 401.0 352 62.2
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 2.6e-107 392.9 313 66.8
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.7e-106 390.2 349 61.0
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.9e-103 379.0 356 58.1
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 5.0e-103 378.6 288 64.9
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.5e-102 376.3 350 58.3
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 5.6e-102 375.2 288 64.2
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.2e-99 367.5 291 66.0
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.2e-84 315.5 225 71.6
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 4.4e-83 312.4 214 76.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.2e-81 306.2 216 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.9e-78 297.0 290 52.8
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 8.1e-77 291.6 204 74.5
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.4e-76 290.8 194 76.8
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.3e-76 288.9 204 72.5
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 4.5e-75 285.8 329 48.0
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 9.3e-73 278.1 196 71.9
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 9.0e-68 261.5 215 64.7
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 3.7e-53 213.0 188 60.6
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.4e-52 211.1 120 85.0
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.2e-49 199.5 121 81.0
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.9e-48 195.3 121 78.5
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.3e-47 193.7 188 58.0
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.7e-45 187.6 120 73.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.4e-44 183.7 137 62.0
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-43 181.0 115 76.5
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.6e-38 163.7 121 71.1
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.3e-36 156.0 95 82.1
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 9.4e-33 145.2 152 54.6
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 5.7e-22 109.4 73 71.2
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.6e-19 101.3 135 46.7
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 3.1e-12 77.0 55 67.3
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.3e-10 70.9 205 30.7
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 9.5e-09 65.5 184 29.3
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.8e-08 63.9 189 30.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 8.0e-08 62.4 52 65.4
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.4e-07 61.6 200 25.0
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.2e-06 58.5 168 28.6


User provided reference genes

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