Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.3e-140 503.1 249 100.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.6e-69 266.2 290 54.8
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.9e-67 260.0 253 58.9
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.4e-67 259.6 240 60.8
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 2.1e-66 256.5 283 54.1
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 7.8e-66 254.6 279 54.5
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.3e-65 253.8 285 53.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 3.9e-65 252.3 294 53.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.5e-64 250.4 286 52.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.5e-64 250.4 276 53.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.3e-64 249.2 286 51.4
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.3e-63 247.3 285 53.3
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.8e-63 246.1 285 53.3
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-62 243.4 286 52.1
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.8e-62 243.4 285 52.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 2.4e-62 243.0 286 52.1
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 5.3e-62 241.9 301 50.2
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 5.3e-62 241.9 287 51.2
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 6.9e-62 241.5 301 50.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 6.9e-62 241.5 283 52.3
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 9.0e-62 241.1 286 50.7
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.2e-61 240.7 301 50.2
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.6e-61 239.6 294 50.3
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 9.9e-61 237.7 301 50.8
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.3e-60 237.3 278 51.4
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.2e-60 236.5 287 50.5
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.9e-60 236.1 282 47.9
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.9e-60 236.1 288 50.7
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 4.9e-60 235.3 286 51.4
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 6.4e-60 235.0 286 51.4
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.1e-59 231.5 315 47.0
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 7.1e-59 231.5 287 49.5
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.2e-58 230.7 285 50.5
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.1e-58 229.9 315 46.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.6e-58 228.8 285 48.8
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 6.0e-58 228.4 282 50.7
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.0e-57 227.6 289 49.1
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.8e-57 226.9 280 51.8
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.0e-57 226.1 291 49.1
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 2.5e-56 223.0 271 52.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 9.6e-56 221.1 282 47.9
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 9.6e-56 221.1 287 49.8
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.6e-55 220.3 287 49.5
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 2.1e-55 219.9 287 48.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.1e-55 219.9 295 49.5
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.1e-55 219.9 297 46.5
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.7e-55 219.2 287 47.7
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-55 218.8 276 51.8
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.2e-55 218.4 299 48.8
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.1e-54 217.6 282 48.6
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.1e-54 216.1 275 49.1
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 4.0e-54 215.7 287 48.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.0e-54 215.7 299 49.5
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.3e-54 215.3 276 51.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 9.0e-54 214.5 282 50.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.2e-53 214.2 285 48.1
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-53 214.2 276 51.4
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.5e-53 213.8 285 47.4
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.6e-53 213.0 281 48.4
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 3.4e-53 212.6 289 47.8
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.3e-52 210.7 279 47.3
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.3e-52 210.7 291 48.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.9e-52 209.5 285 47.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 3.8e-52 209.1 285 45.6
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.1e-51 207.6 287 48.1
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.1e-51 207.6 292 45.5
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.9e-51 206.8 256 50.0
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.2e-51 206.1 286 45.8
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 7.1e-51 204.9 285 46.3
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-50 204.1 283 48.4
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.6e-50 203.8 280 45.4
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.0e-49 201.1 278 47.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-49 201.1 294 46.6
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.0e-49 199.5 283 44.9
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.9e-49 199.1 291 46.0
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 6.7e-49 198.4 281 45.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.6e-47 193.7 290 46.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 6.2e-47 191.8 290 44.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 6.2e-47 191.8 412 36.4
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.2e-47 191.4 266 47.0
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 2.4e-46 189.9 305 43.0
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.2e-45 187.6 290 44.1
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.8e-45 185.3 285 43.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.3e-44 184.1 289 42.9
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.4e-43 180.6 285 43.9
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.5e-42 176.0 286 43.0
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 3.0e-41 172.9 290 44.1
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.5e-40 170.6 231 49.4
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.9e-40 170.2 293 43.0
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.9e-40 170.2 292 41.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.7e-40 168.7 277 43.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.7e-40 168.7 292 39.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.2e-39 166.8 292 39.7
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.8e-39 166.4 298 39.6
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.7e-39 166.0 277 42.2
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 6.3e-39 165.2 289 42.6
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 8.2e-39 164.9 293 42.0
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.1e-38 162.9 287 42.9
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 3.1e-38 162.9 287 42.9
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 4.1e-38 162.5 287 42.9
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-37 161.0 287 42.5
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-37 161.0 287 42.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.0e-36 157.9 300 37.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.1e-35 154.5 218 48.2
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.1e-35 154.5 277 40.8
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.2e-35 152.5 293 38.9
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 5.5e-35 152.1 286 39.9
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.2e-34 151.0 277 39.4
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.4e-33 147.5 117 64.1
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.8e-33 147.1 292 39.0
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 5.1e-33 145.6 283 40.3
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.3e-31 138.7 260 39.6
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.6e-29 133.3 307 35.8
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 5.9e-29 132.1 119 60.5
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.0e-28 131.3 229 42.8
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-28 131.0 118 57.6
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-26 124.4 213 42.7
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 8.8e-25 118.2 233 39.9
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.1e-24 117.9 332 31.6
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.0e-24 117.1 117 53.0
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.3e-24 116.3 122 56.6
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 3.7e-23 112.8 261 37.5
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 6.3e-23 112.1 89 69.7
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-22 110.5 105 57.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 3.1e-22 109.8 121 50.4
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.2e-21 107.8 87 65.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.4e-21 106.3 125 55.2
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.8e-20 102.8 130 45.4
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 8.5e-20 101.7 259 35.9
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.4e-19 100.9 124 52.4
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 2.5e-19 100.1 122 48.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.7e-18 95.9 130 42.3
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 4.7e-18 95.9 100 52.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 6.1e-18 95.5 134 46.3
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.4e-17 94.4 278 34.5
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 2.3e-17 93.6 108 51.9
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.0e-17 93.2 125 43.2
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.7e-17 92.0 203 38.4
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 3.3e-16 89.7 109 53.2
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.3e-16 89.7 222 32.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.7e-15 87.4 291 31.6
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-15 87.0 137 42.3
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-15 87.0 137 42.3
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 3.5e-13 79.7 101 45.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-11 74.3 237 35.0
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 4.2e-11 72.8 237 34.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 5.5e-11 72.4 237 34.6
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 4.0e-09 66.2 57 57.9
DCAR_024051 Daucus carota HOM05D004212 ORTHO05D005128 2.6e-08 63.5 66 56.1
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 9.7e-08 61.6 53 54.7
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-07 61.2 72 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.2e-07 60.5 107 43.9
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 3.1e-06 56.6 56 55.4
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.3e-06 55.8 108 39.8


User provided reference genes

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