Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 6.2e-220 767.3 430 100.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.0e-177 627.1 463 79.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.3e-177 626.7 463 78.2
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.7e-177 626.3 463 78.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.1e-171 605.1 463 76.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.5e-170 601.7 461 76.1
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.0e-169 600.5 461 75.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.9e-169 599.0 461 75.7
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.8e-169 598.6 461 75.5
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.5e-168 596.7 463 74.7
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.9e-168 596.3 463 75.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 4.2e-168 595.1 461 75.1
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.2e-168 595.1 463 74.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.2e-167 593.6 461 73.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 8.0e-167 590.9 465 73.8
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.8e-166 589.7 463 74.9
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 6.7e-166 587.8 465 74.0
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.2e-165 587.0 463 73.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.0e-165 586.3 430 72.3
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.4e-165 585.1 465 73.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 8.3e-164 580.9 465 73.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 8.3e-164 580.9 465 73.5
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 3.1e-163 578.9 465 73.5
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 4.1e-163 578.6 463 72.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.5e-162 575.5 463 71.9
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 7.7e-162 574.3 463 72.1
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 7.7e-162 574.3 461 72.9
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.9e-161 572.4 463 72.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.1e-160 570.5 461 72.5
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.9e-160 569.7 465 73.3
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.2e-160 568.9 466 71.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 7.2e-160 567.8 465 71.2
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 9.4e-160 567.4 463 72.6
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 9.4e-160 567.4 461 72.0
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.6e-159 566.6 463 72.8
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.6e-159 566.6 463 70.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 4.7e-159 565.1 465 71.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 8.0e-159 564.3 460 70.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 8.0e-159 564.3 463 70.8
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.8e-158 563.1 466 70.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.0e-158 562.0 494 68.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.2e-157 560.5 431 68.4
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.2e-157 560.5 462 71.4
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.2e-156 556.2 428 69.2
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 8.3e-156 554.3 464 68.8
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.1e-155 553.9 465 70.5
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-155 553.5 463 69.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.4e-155 552.7 462 69.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 4.1e-155 552.0 463 71.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.0e-155 551.2 465 69.9
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 9.1e-155 550.8 461 70.5
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.0e-154 549.7 460 68.5
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.0e-154 549.7 463 69.1
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-154 549.3 463 71.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.7e-154 549.3 461 68.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.9e-154 548.1 463 70.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-153 547.4 463 69.3
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.0e-153 547.4 463 71.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.3e-153 547.0 461 70.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-153 547.0 463 70.2
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.7e-153 546.6 463 69.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 3.8e-153 545.4 426 68.1
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 3.8e-153 545.4 426 68.1
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 3.8e-153 545.4 479 67.4
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 3.8e-153 545.4 461 70.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.0e-153 545.0 467 67.7
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 8.6e-153 544.3 461 67.7
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.1e-152 543.9 485 65.8
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.9e-152 543.1 463 68.7
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.9e-152 543.1 461 69.6
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.3e-152 542.3 366 77.3
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 4.2e-152 542.0 461 69.8
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.5e-152 541.6 461 69.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 9.5e-152 540.8 462 70.3
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.2e-151 540.4 442 71.5
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.1e-151 539.7 461 69.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.8e-151 539.3 463 68.5
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.8e-151 539.3 463 69.1
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.7e-151 538.5 463 68.9
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 4.7e-151 538.5 461 69.2
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 6.1e-151 538.1 463 68.7
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 6.1e-151 538.1 462 69.7
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-150 537.3 463 68.3
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.0e-150 537.3 463 70.6
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 3.0e-150 535.8 463 68.5
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.0e-149 533.1 456 69.1
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.4e-147 525.0 463 66.3
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 7.8e-146 521.2 458 66.8
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 3.9e-145 518.8 463 66.5
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.9e-145 518.8 367 73.0
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.1e-144 517.3 366 72.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.9e-144 516.5 462 66.0
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.9e-144 516.5 458 66.4
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.3e-144 515.8 458 66.4
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 3.3e-144 515.8 458 66.2
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 4.7e-143 511.9 366 71.9
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.4e-142 510.4 467 65.3
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.5e-141 506.9 552 59.8
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.2e-138 497.3 464 57.5
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 7.8e-138 494.6 366 69.4
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.1e-134 484.2 366 68.6
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 2.3e-134 483.0 366 68.3
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.0e-134 482.3 463 62.9
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.9e-129 465.7 461 61.8
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.6e-127 459.1 463 58.3
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 2.3e-126 456.4 497 60.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 6.8e-126 454.9 461 61.8
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.2e-125 454.1 383 71.0
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 2.5e-120 436.4 465 60.2
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 3.1e-118 429.5 385 66.8
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 6.8e-118 428.3 368 63.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.5e-117 427.2 464 58.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.6e-117 426.4 463 59.8
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.3e-97 360.9 289 66.8
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 3.3e-96 356.3 465 52.3
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.2e-93 347.8 256 73.8
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.2e-92 343.6 468 48.5
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.3e-84 317.8 464 44.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 5.1e-65 252.7 218 61.9
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 5.0e-60 236.1 189 69.8
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 6.5e-60 235.7 366 38.8
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.7e-55 221.1 242 51.7
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.2e-51 206.8 367 37.1
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 3.4e-48 196.8 163 63.2
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.8e-47 193.0 150 66.7
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.0e-45 187.6 123 71.5
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 8.5e-44 182.2 510 36.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.7e-37 160.6 375 31.2
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.8e-36 156.8 123 67.5
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 5.2e-33 146.4 136 61.0
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 4.9e-31 139.8 501 30.7
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.2e-21 108.6 68 85.3
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.3e-20 105.1 221 36.7
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 8.6e-20 102.4 95 61.1
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.2e-18 98.6 55 94.5
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 4.0e-17 93.6 116 49.1
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 3.7e-15 87.0 59 76.3
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.1e-13 81.3 207 36.7
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.3e-12 77.8 60 63.3
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.1e-11 75.5 62 61.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 5.6e-11 73.2 59 67.8
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 7.3e-11 72.8 49 85.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 1.2e-10 72.0 61 59.0
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 2.1e-10 71.2 113 42.5
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.1e-10 71.2 67 52.2
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.6e-10 70.5 97 48.5
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.9e-07 60.1 63 58.7


User provided reference genes

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