Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C80G11 Lonicera japonica HOM05D000773 ORTHO05D000588 3.1e-47 191.4 94 100.0
Dinv14528 Davidia involucrata HOM05D000773 ORTHO05D000588 4.6e-19 97.8 91 52.7
Dinv35511 Davidia involucrata HOM05D000773 ORTHO05D000588 4.6e-19 97.8 91 52.7
Cc06_g01650 Coffea canephora HOM05D000773 ORTHO05D000588 6.7e-18 94.0 89 52.8
GSVIVG01034007001 Vitis vinifera HOM05D000773 ORTHO05D000588 1.3e-16 89.7 91 52.7
TAR633G0182 Trochodendron aralioides HOM05D000773 ORTHO05D000588 3.7e-16 88.2 87 52.9
TAR623G1374 Trochodendron aralioides HOM05D000773 ORTHO05D000588 6.3e-16 87.4 89 52.8
Nn2g11371 Nelumbo nucifera HOM05D000773 ORTHO05D000588 7.7e-14 80.5 91 49.5
CSS0026497 Camellia sinensis var. sinensis HOM05D000773 ORTHO05D000588 1.3e-13 79.7 95 46.3
Oeu004616.2 Olea europaea HOM05D000773 ORTHO05D000588 2.2e-13 79.0 90 44.4
Dinv37083 Davidia involucrata HOM05D000773 ORTHO05D000588 2.5e-12 75.5 61 57.4
Oeu040796.1 Olea europaea HOM05D000773 ORTHO05D000588 1.2e-11 73.2 84 44.0
Oeu040795.1 Olea europaea HOM05D000773 ORTHO05D000588 2.1e-11 72.4 84 42.9
Ah.15g099680 Amaranthus hybridus HOM05D000773 ORTHO05D000588 4.6e-11 71.2 88 46.6
MSTRG.5597 Avicennia marina HOM05D000773 ORTHO05D000588 6.1e-11 70.9 87 41.4
Peaxi162Scf01058g00013 Petunia axillaris HOM05D000773 ORTHO05D000588 6.1e-11 70.9 95 42.1
Migut.N00820 Erythranthe guttata HOM05D000773 ORTHO05D000588 7.9e-11 70.5 90 41.1
Lsat_1_v5_gn_5_170900 Lactuca sativa HOM05D000773 ORTHO05D000588 1.0e-10 70.1 96 44.8
Actinidia16067 Actinidia chinensis HOM05D000773 ORTHO05D000588 1.8e-10 69.3 94 42.6
vmacro06937 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 3.9e-10 68.2 95 41.1
Nitab4.5_0010287g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 8.8e-10 67.0 96 39.6
Nitab4.5_0000744g0190 Nicotiana tabacum HOM05D000773 ORTHO05D000588 1.1e-09 66.6 96 39.6
AUR62001691 Chenopodium quinoa HOM05D000773 ORTHO05D000588 1.5e-09 66.2 88 44.3
DCAR_018728 Daucus carota HOM05D000773 ORTHO05D000588 1.5e-09 66.2 78 44.9
EL10Ac7g16120 Beta vulgaris HOM05D000773 ORTHO05D000588 2.5e-09 65.5 90 42.2
CAN.G338.62 Capsicum annuum HOM05D000773 ORTHO05D000588 2.5e-09 65.5 84 38.1
Lj2P1076T6 Lonicera japonica HOM05D000773 ORTHO05D000588 3.3e-09 65.1 93 41.9
RcHm_v2.0_Chr3g0463841 Rosa chinensis HOM05D000773 ORTHO05D000588 3.3e-09 65.1 51 60.8
Migut.J00223 Erythranthe guttata HOM05D000773 ORTHO05D000588 4.3e-09 64.7 92 39.1
Peaxi162Scf00141g00719 Petunia axillaris HOM05D000773 ORTHO05D000588 4.3e-09 64.7 84 40.5
Actinidia26551 Actinidia chinensis HOM05D000773 ORTHO05D000588 5.7e-09 64.3 86 39.5
Prupe.6G270800 Prunus persica HOM05D000773 ORTHO05D000588 5.7e-09 64.3 71 46.5
Rhsim13G0073100 Rhododendron simsii HOM05D000773 ORTHO05D000588 5.7e-09 64.3 95 38.9
RcHm_v2.0_Chr3g0470651 Rosa chinensis HOM05D000773 ORTHO05D000588 9.7e-09 63.5 54 59.3
vmacro02994 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 9.7e-09 63.5 95 38.9
Atru.chr8.2200 Acer truncatum HOM05D000773 ORTHO05D000588 1.3e-08 63.2 61 54.1
Ciclev10011958m.g Citrus clementina HOM05D000773 ORTHO05D000588 1.7e-08 62.8 61 52.5
CSS0017948 Camellia sinensis var. sinensis HOM05D000773 ORTHO05D000588 2.2e-08 62.4 49 61.2
CSS0026255 Camellia sinensis var. sinensis HOM05D000773 ORTHO05D000588 2.2e-08 62.4 49 61.2
AUR62020091 Chenopodium quinoa HOM05D000773 ORTHO05D000588 2.2e-08 62.4 88 42.0
Rhsim04G0166100 Rhododendron simsii HOM05D000773 ORTHO05D000588 2.2e-08 62.4 46 63.0
Actinidia24967 Actinidia chinensis HOM05D000773 ORTHO05D000588 2.8e-08 62.0 89 39.3
CAN.G394.103 Capsicum annuum HOM05D000773 ORTHO05D000588 2.8e-08 62.0 96 40.6
Dinv14469 Davidia involucrata HOM05D000773 ORTHO05D000588 2.8e-08 62.0 89 41.6
Dinv28588 Davidia involucrata HOM05D000773 ORTHO05D000588 3.7e-08 61.6 89 41.6
ECA248G3286 Erigeron canadensis HOM05D000773 ORTHO05D000588 3.7e-08 61.6 51 56.9
Hma1.2p1_0227F.1_g096240 Hydrangea macrophylla HOM05D000773 ORTHO05D000588 3.7e-08 61.6 89 44.9
MD04G1147000 Malus domestica HOM05D000773 ORTHO05D000588 3.7e-08 61.6 60 51.7
Nitab4.5_0001837g0020 Nicotiana tabacum HOM05D000773 ORTHO05D000588 3.7e-08 61.6 67 40.3
unitig_27.g24822 Utricularia gibba HOM05D000773 ORTHO05D000588 3.7e-08 61.6 90 34.4
Cfa017254 Carpinus fangiana HOM05D000773 ORTHO05D000588 4.8e-08 61.2 50 58.0
Nitab4.5_0000008g0790 Nicotiana tabacum HOM05D000773 ORTHO05D000588 4.8e-08 61.2 82 35.4
PSO210G7163 Papaver somniferum HOM05D000773 ORTHO05D000588 6.3e-08 60.8 76 48.7
SalBow5G1897 Salvia bowleyana HOM05D000773 ORTHO05D000588 8.2e-08 60.5 94 39.4
Actinidia38833 Actinidia chinensis HOM05D000773 ORTHO05D000588 1.4e-07 59.7 79 40.5
Sc21g0006200 Simmondsia chinensis HOM05D000773 ORTHO05D000588 1.4e-07 59.7 88 42.0
MD12G1160300 Malus domestica HOM05D000773 ORTHO05D000588 1.8e-07 59.3 54 55.6
PGSC0003DMG400020320 Solanum tuberosum HOM05D000773 ORTHO05D000588 2.4e-07 58.9 84 38.1
Lalb_Chr09g0329021 Lupinus albus HOM05D000773 ORTHO05D000588 3.1e-07 58.5 56 51.8
Potri.008G094400 Populus trichocarpa HOM05D000773 ORTHO05D000588 3.1e-07 58.5 56 50.0
Manes.01G029100 Manihot esculenta HOM05D000773 ORTHO05D000588 4.1e-07 58.2 56 50.0
Oeu004570.2 Olea europaea HOM05D000773 ORTHO05D000588 4.1e-07 58.2 54 53.7
Haze_20952 Corylus avellana HOM05D000773 ORTHO05D000588 5.3e-07 57.8 51 52.9
Ciclev10031172m.g Citrus clementina HOM05D000773 ORTHO05D000588 6.9e-07 57.4 52 55.8
CiPaw.05G126600 Carya illinoinensis HOM05D000773 ORTHO05D000588 9.1e-07 57.0 52 53.8
Haze_11925 Corylus avellana HOM05D000773 ORTHO05D000588 9.1e-07 57.0 83 41.0
DCAR_018729 Daucus carota HOM05D000773 ORTHO05D000588 9.1e-07 57.0 56 48.2
Solyc09g014170.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 9.1e-07 57.0 84 38.1
Sopen09g007050 Solanum pennellii HOM05D000773 ORTHO05D000588 9.1e-07 57.0 84 38.1
DCAR_030032 Daucus carota HOM05D000773 ORTHO05D000588 1.2e-06 56.6 79 41.8
Migut.E00054 Erythranthe guttata HOM05D000773 ORTHO05D000588 1.5e-06 56.2 52 53.8
Dinv28607 Davidia involucrata HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 50.0
FvH4_6g12001 Fragaria vesca HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 55.8
FAN05G0695 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 55.8
FAN14G0310 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 55.8
FAN14G2427 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 55.8
Oeu016221.1 Olea europaea HOM05D000773 ORTHO05D000588 2.0e-06 55.8 50 56.0
PSO210G5839 Papaver somniferum HOM05D000773 ORTHO05D000588 2.0e-06 55.8 57 49.1
TWI79G1532 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 2.0e-06 55.8 52 51.9
Actinidia28638 Actinidia chinensis HOM05D000773 ORTHO05D000588 2.6e-06 55.5 52 51.9
Cfa008894 Carpinus fangiana HOM05D000773 ORTHO05D000588 2.6e-06 55.5 83 39.8
Cfa012207 Carpinus fangiana HOM05D000773 ORTHO05D000588 2.6e-06 55.5 48 52.1
Haze_08806 Corylus avellana HOM05D000773 ORTHO05D000588 2.6e-06 55.5 48 52.1
FAN09G3928 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.6e-06 55.5 57 54.4
FAN17G0337 Fragaria x ananassa HOM05D000773 ORTHO05D000588 2.6e-06 55.5 52 51.9
Cc11_g12190 Coffea canephora HOM05D000773 ORTHO05D000588 3.4e-06 55.1 56 50.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 3.4e-06 55.1 97 39.2
FvH4_4g30340 Fragaria vesca HOM05D000773 ORTHO05D000588 3.4e-06 55.1 52 50.0
FAN12G2277 Fragaria x ananassa HOM05D000773 ORTHO05D000588 3.4e-06 55.1 52 50.0
FAN22G0446 Fragaria x ananassa HOM05D000773 ORTHO05D000588 3.4e-06 55.1 52 50.0
Lalb_Chr05g0220021 Lupinus albus HOM05D000773 ORTHO05D000588 3.4e-06 55.1 52 51.9
Rhsim12G0135000 Rhododendron simsii HOM05D000773 ORTHO05D000588 3.4e-06 55.1 56 46.4
MBI16_g09912_MAGBIO Magnolia biondii HOM05D000773 ORTHO05D000588 4.5e-06 54.7 58 46.6
SalBow8G2075 Salvia bowleyana HOM05D000773 ORTHO05D000588 4.5e-06 54.7 52 50.0
MSTRG.7753 Avicennia marina HOM05D000773 ORTHO05D000588 5.9e-06 54.3 56 50.0
CiPaw.06G091200 Carya illinoinensis HOM05D000773 ORTHO05D000588 5.9e-06 54.3 52 50.0
Cc01_g13810 Coffea canephora HOM05D000773 ORTHO05D000588 5.9e-06 54.3 94 31.9
Cc04_g15080 Coffea canephora HOM05D000773 ORTHO05D000588 5.9e-06 54.3 78 38.5
Dinv16717 Davidia involucrata HOM05D001328 ORTHO05D001459 5.9e-06 54.3 52 51.9
FAN07G1683 Fragaria x ananassa HOM05D000773 ORTHO05D000588 5.9e-06 54.3 52 50.0
Gohir.D02G128900 Gossypium hirsutum HOM05D000773 ORTHO05D000588 5.9e-06 54.3 52 50.0
Lsat_1_v5_gn_3_56080 Lactuca sativa HOM05D000773 ORTHO05D000588 5.9e-06 54.3 52 51.9
Mapoly0025s0094 Marchantia polymorpha HOM05D000773 ORTHO05D000588 5.9e-06 54.3 60 45.0
Potri.010G159700 Populus trichocarpa HOM05D000773 ORTHO05D000588 5.9e-06 54.3 56 48.2
RcHm_v2.0_Chr4g0438631 Rosa chinensis HOM05D000773 ORTHO05D000588 5.9e-06 54.3 52 50.0
SGA_v2.0_scaffold146G36136 Striga asiatica HOM05D000773 ORTHO05D000588 5.9e-06 54.3 49 53.1
Aqoxy1G00703 Aquilegia oxysepala HOM05D000773 ORTHO05D000588 7.7e-06 53.9 60 48.3
Duzib251G0729 Durio zibethinus HOM05D000773 ORTHO05D000588 7.7e-06 53.9 52 48.1
Peaxi162Scf00191g01433 Petunia axillaris HOM05D000773 ORTHO05D000588 7.7e-06 53.9 60 45.0
Sabra10G0121400 Salix brachista HOM05D000773 ORTHO05D000588 7.7e-06 53.9 56 46.4
THA.LOC104822020 Tarenaya hassleriana HOM05D000773 ORTHO05D000588 7.7e-06 53.9 52 53.8


User provided reference genes

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