Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C757G0 Lonicera japonica HOM05D000348 ORTHO05D235005 5.1e-37 157.1 74 100.0
MBI15_g29594_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 1.1e-12 76.3 75 56.0
MBI15_g15740_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 2.8e-11 71.6 75 54.7
Lj2A753G35 Lonicera japonica HOM05D000348 ORTHO05D000244 4.8e-11 70.9 45 82.2
Lju926A3T39 Lonicera japonica HOM05D000348 ORTHO05D000244 1.8e-10 68.9 45 77.8
Aqoxy4G02341 Aquilegia oxysepala HOM05D000348 ORTHO05D000244 2.4e-10 68.6 45 75.6
Dinv15343 Davidia involucrata HOM05D000348 ORTHO05D000244 2.4e-10 68.6 45 75.6
Lj2A754G18 Lonicera japonica HOM05D000348 ORTHO05D000244 2.4e-10 68.6 45 80.0
MSTRG.7134 Avicennia marina HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
CANSAT56G4373 Cannabis sativa HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 73.3
Cc09_g00420 Coffea canephora HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Migut.M01440 Erythranthe guttata HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 73.3
Eucgr.E03859 Eucalyptus grandis HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Gohir.A06G156900 Gossypium hirsutum HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 73.3
Hma1.2p1_1175F.1_g263950 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Hma1.2p1_1780F.1_g302065 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Manes.08G069800 Manihot esculenta HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Nitab4.5_0001296g0030 Nicotiana tabacum HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Peaxi162Scf00442g00710 Petunia axillaris HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Potri.006G006000 Populus trichocarpa HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
SalBow8G5006 Salvia bowleyana HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 73.3
SGA_v2.0_scaffold186G40117 Striga asiatica HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 73.3
Thecc.06G240000 Theobroma cacao HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
TAR629G0261 Trochodendron aralioides HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
GSVIVG01005133001 Vitis vinifera HOM05D000348 ORTHO05D000244 3.1e-10 68.2 45 75.6
Cpa.g.sc27.237 Carica papaya HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 75.6
Duzib160G0229 Durio zibethinus HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 75.6
Manes.09G082900 Manihot esculenta HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 73.3
Nn1g03194 Nelumbo nucifera HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 75.6
Potri.016G006500 Populus trichocarpa HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 75.6
PGR042G1669 Punica granatum HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 73.3
Sabra16G0011300 Salix brachista HOM05D000348 ORTHO05D000244 4.0e-10 67.8 45 75.6
ClCG01G011090 Citrullus lanatus HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 71.1
Ciclev10014396m.g Citrus clementina HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 73.3
MELO3C026099.2 Cucumis melo HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 71.1
CsaV3_1G015650 Cucumis sativus L. HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 71.1
Dinv04399 Davidia involucrata HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 73.3
Lj1A1246T21 Lonicera japonica HOM05D000348 ORTHO05D000244 5.3e-10 67.4 44 77.3
Lj2C752G0 Lonicera japonica HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 77.8
Sed0013232 Sechium edule HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 71.1
TWI63G1322 Tripterygium wilfordii HOM05D000348 ORTHO05D000244 5.3e-10 67.4 45 73.3
MBI16_g14389_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 6.9e-10 67.0 45 71.1
MBI16_g14392_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 6.9e-10 67.0 45 71.1
Sabra06G0004800 Salix brachista HOM05D000348 ORTHO05D000244 6.9e-10 67.0 45 75.6
SHI24436 Sapria himalayana HOM05D000348 ORTHO05D000244 6.9e-10 67.0 45 71.1
ATR0827G135 Amborella trichopoda HOM05D000348 ORTHO05D000244 9.0e-10 66.6 45 73.3
Hma1.2p1_0372F.1_g138370 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 9.0e-10 66.6 45 71.1
Lsat_1_v5_gn_1_130060 Lactuca sativa HOM05D000348 ORTHO05D000244 9.0e-10 66.6 45 73.3
Oeu025958.1 Olea europaea HOM05D000348 ORTHO05D000244 9.0e-10 66.6 45 71.1
CiPaw.09G108300 Carya illinoinensis HOM05D000348 ORTHO05D000244 1.5e-09 65.9 45 71.1
Duzib235G1390 Durio zibethinus HOM05D000348 ORTHO05D000244 1.5e-09 65.9 45 68.9
Gohir.D06G163200 Gossypium hirsutum HOM05D000348 ORTHO05D000244 1.5e-09 65.9 45 71.1
Gorai.010G190300 Gossypium raimondii HOM05D000348 ORTHO05D000244 1.5e-09 65.9 45 71.1
CSS0006019 Camellia sinensis var. sinensis HOM05D000348 ORTHO05D000244 2.0e-09 65.5 45 75.6
Lsat_1_v5_gn_7_13121 Lactuca sativa HOM05D000348 ORTHO05D000244 2.0e-09 65.5 45 73.3
Sc05g0009820 Simmondsia chinensis HOM05D000348 ORTHO05D000244 2.0e-09 65.5 45 73.3
CAN.G1986.2 Capsicum annuum HOM05D000348 ORTHO05D000244 3.4e-09 64.7 45 73.3
Cfa000043 Carpinus fangiana HOM05D000348 ORTHO05D000244 3.4e-09 64.7 45 73.3
AUR62012840 Chenopodium quinoa HOM05D000348 ORTHO05D000244 3.4e-09 64.7 45 71.1
AUR62021819 Chenopodium quinoa HOM05D000348 ORTHO05D000244 3.4e-09 64.7 45 71.1
SGA_v2.0_scaffold7G03702 Striga asiatica HOM05D000348 ORTHO05D000244 3.4e-09 64.7 45 68.9
Atru.chr1.2278 Acer truncatum HOM05D000348 ORTHO05D000244 4.5e-09 64.3 45 71.1
Actinidia02287 Actinidia chinensis HOM05D000348 ORTHO05D000244 4.5e-09 64.3 45 73.3
CSS0042959 Camellia sinensis var. sinensis HOM05D000348 ORTHO05D000244 4.5e-09 64.3 45 73.3
CAN.G1156.13 Capsicum annuum HOM05D000348 ORTHO05D000244 5.8e-09 63.9 45 71.1
Hund21135 Selenicereus undatus HOM05D000348 ORTHO05D000244 5.8e-09 63.9 45 68.9
HPP92_019320 Vanilla planifolia HOM05D000348 ORTHO05D000244 5.8e-09 63.9 45 71.1
COL.COLO4_31933 Corchorus olitorius HOM05D000348 ORTHO05D000244 7.6e-09 63.5 45 71.1
Eucgr.L00157 Eucalyptus grandis HOM05D000348 ORTHO05D000244 7.6e-09 63.5 45 71.1
Lj4g0022244 Lotus japonicus HOM05D000348 ORTHO05D000244 7.6e-09 63.5 45 71.1
QL05p067859 Quercus lobata HOM05D000348 ORTHO05D000244 7.6e-09 63.5 45 71.1
Aa31LG2G12430 Aethionema arabicum HOM05D000348 ORTHO05D000244 1.0e-08 63.2 45 71.1
Glyma.07G267800 Glycine max HOM05D000348 ORTHO05D000244 1.0e-08 63.2 45 71.1
Glyma.17G006100 Glycine max HOM05D000348 ORTHO05D000244 1.0e-08 63.2 45 71.1
THA.LOC104815474 Tarenaya hassleriana HOM05D000348 ORTHO05D000244 1.0e-08 63.2 45 71.1
AL7G38670 Arabidopsis lyrata HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
AT4G16370 Arabidopsis thaliana HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
CSS0000920 Camellia sinensis var. sinensis HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 71.1
CARHR222740 Cardamine hirsuta HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Lalb_Chr13g0304351 Lupinus albus HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Psat4g003080 Pisum sativum HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Rhsim13G0141400 Rhododendron simsii HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Solyc11g012700.2 Solanum lycopersicum HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Sopen11g007430 Solanum pennellii HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
TPR.G5975 Trifolium pratense HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
vmacro03615 Vaccinium macrocarpon HOM05D000348 ORTHO05D000244 1.3e-08 62.8 45 68.9
Carub.0007s2516 Capsella rubella HOM05D000348 ORTHO05D000244 1.7e-08 62.4 45 68.9
Ca_20998_v3 Cicer arietinum L. HOM05D000348 ORTHO05D000244 1.7e-08 62.4 45 68.9
Lj2A257T65 Lonicera japonica HOM05D000348 ORTHO05D000244 1.7e-08 62.4 45 68.9
PGSC0003DMG400013297 Solanum tuberosum HOM05D000348 ORTHO05D000244 1.7e-08 62.4 45 68.9
EL10Ac8g20257 Beta vulgaris HOM05D000348 ORTHO05D000244 2.2e-08 62.0 44 68.2
BcaB04g18379 Brassica carinata HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
BcaC07g37979 Brassica carinata HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
A08p12260 Brassica napus HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
BolC8t48361H Brassica oleracea HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
BraA08t33232Z Brassica rapa HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
Thhalv10024512m.g Eutrema salsugineum HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 66.7
PSO675G3661 Papaver somniferum HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 68.9
PSO832G1343 Papaver somniferum HOM05D000348 ORTHO05D000244 2.2e-08 62.0 45 68.9
Haze_07011 Corylus avellana HOM05D000348 ORTHO05D000244 2.9e-08 61.6 45 68.9
Medtr4g133968 Medicago truncatula HOM05D000348 ORTHO05D000244 2.9e-08 61.6 45 68.9
Os03g0751100 Oryza sativa ssp. japonica HOM05D000348 ORTHO05D000244 2.9e-08 61.6 45 68.9
Zm00001eb057440 Zea mays HOM05D000348 ORTHO05D000244 2.9e-08 61.6 45 68.9
arahy.Tifrunner.gnm1.ann1.WI2A41 Arachis hypogaea HOM05D000348 ORTHO05D000244 3.8e-08 61.2 45 68.9
arahy.Tifrunner.gnm1.ann1.XKSD0A Arachis hypogaea HOM05D000348 ORTHO05D000244 3.8e-08 61.2 45 68.9
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 3.8e-08 61.2 45 68.9
Sp7g14890 Schrenkiella parvula HOM05D000348 ORTHO05D000244 3.8e-08 61.2 45 64.4
HanXRQChr01g0003611 Helianthus annuus HOM05D000348 ORTHO05D000244 4.9e-08 60.8 45 66.7
Lj2C755G0 Lonicera japonica HOM05D000348 ORTHO05D000244 4.9e-08 60.8 45 73.3
unitig_37.g12180 Utricularia gibba HOM05D000348 ORTHO05D000244 4.9e-08 60.8 45 66.7
CDE04G0960 Ceratophyllum demersum HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 64.4
CDE07G1298 Ceratophyllum demersum HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 64.4
ECA248G2537 Erigeron canadensis HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 66.7
Lalb_Chr12g0195971 Lupinus albus HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 66.7
PSO063G4966 Papaver somniferum HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 66.7
PSO832G4352 Papaver somniferum HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 66.7
Sed0025512 Sechium edule HOM05D000348 ORTHO05D000244 8.4e-08 60.1 45 64.4
VMungo1127G1895 Vigna mungo HOM05D000348 ORTHO05D000244 1.1e-07 59.7 45 66.7
VMungo1215G2381 Vigna mungo HOM05D000348 ORTHO05D000244 1.1e-07 59.7 45 66.7
Cc09_g00400 Coffea canephora HOM05D000348 ORTHO05D000244 1.4e-07 59.3 45 64.4
FvH4_3g00400 Fragaria vesca HOM05D000348 ORTHO05D000244 1.9e-07 58.9 45 64.4
Phvul.003G086500 Phaseolus vulgaris HOM05D000348 ORTHO05D000244 1.9e-07 58.9 45 64.4
RcHm_v2.0_Chr5g0000601 Rosa chinensis HOM05D000348 ORTHO05D000244 1.9e-07 58.9 45 64.4
FAN25G1714 Fragaria x ananassa HOM05D000348 ORTHO05D000244 2.5e-07 58.5 45 64.4
HanXRQChr11g0337001 Helianthus annuus HOM05D000348 ORTHO05D000244 2.5e-07 58.5 45 64.4
FAN21G1769 Fragaria x ananassa HOM05D000348 ORTHO05D000244 5.5e-07 57.4 45 62.2
Prupe.4G004600 Prunus persica HOM05D000348 ORTHO05D000244 7.1e-07 57.0 45 60.0
Cc09_g00410 Coffea canephora HOM05D000348 ORTHO05D000244 9.3e-07 56.6 45 64.4
PSO729G0164 Papaver somniferum HOM05D000348 ORTHO05D000244 1.2e-06 56.2 45 62.2
Atru.chr4.803 Acer truncatum HOM05D000348 ORTHO05D000244 7.9e-06 53.5 45 62.2


User provided reference genes

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