Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.0e-153 544.7 265 100.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.3e-74 283.9 279 54.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 6.4e-74 281.6 294 54.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.4e-73 280.4 273 53.5
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.5e-72 275.8 276 53.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.5e-70 269.6 275 53.1
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.3e-70 269.2 266 55.6
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.6e-69 266.9 276 53.6
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.1e-69 266.5 271 53.9
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.7e-69 265.4 271 54.6
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 4.0e-68 262.3 275 53.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 5.2e-68 261.9 265 52.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 8.9e-68 261.2 275 52.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.5e-67 260.4 273 50.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 5.8e-67 258.5 270 52.6
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.3e-66 257.3 276 52.2
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.7e-66 256.9 281 49.8
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.9e-66 256.1 272 50.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 6.4e-66 255.0 270 52.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 6.4e-66 255.0 271 51.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.1e-65 254.2 275 49.8
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 4.1e-65 252.3 274 48.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 5.4e-65 251.9 278 48.6
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.2e-65 251.1 281 50.9
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 9.2e-65 251.1 270 50.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.2e-64 250.8 277 49.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.2e-64 250.8 273 51.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.6e-64 250.4 274 50.7
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.1e-64 250.0 291 49.5
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 3.5e-64 249.2 281 49.5
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 4.6e-64 248.8 268 51.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.3e-63 247.3 267 50.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.3e-63 247.3 270 51.1
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-63 247.3 281 46.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.7e-63 246.9 272 50.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.3e-63 246.5 274 48.5
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.3e-63 246.5 272 50.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.9e-63 245.7 273 49.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 5.1e-63 245.4 196 62.8
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.6e-63 245.0 271 48.3
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 6.6e-63 245.0 267 50.2
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.6e-63 245.0 273 48.0
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.6e-63 244.6 277 48.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.1e-62 244.2 274 48.5
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.5e-62 243.8 271 50.6
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.5e-62 243.8 276 50.7
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.9e-62 243.4 278 50.0
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.5e-62 243.0 274 49.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.5e-62 243.0 274 49.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.5e-62 243.0 269 49.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.3e-62 242.7 262 50.4
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.3e-62 242.7 275 49.1
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 3.3e-62 242.7 276 48.6
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.3e-62 242.7 273 50.2
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 4.3e-62 242.3 272 51.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 5.6e-62 241.9 277 50.2
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.6e-62 241.9 277 51.3
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 7.3e-62 241.5 273 48.7
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 9.5e-62 241.1 276 48.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.5e-62 241.1 273 47.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 9.5e-62 241.1 278 50.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.2e-61 240.7 273 47.6
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.2e-61 240.7 270 50.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.6e-61 240.4 269 49.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.1e-61 240.0 274 47.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.1e-61 240.0 272 49.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.8e-61 239.6 269 49.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.2e-61 238.4 273 49.5
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.2e-61 238.4 275 49.1
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.1e-60 237.7 272 47.1
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-60 237.7 275 50.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-60 237.7 274 46.7
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-60 237.7 275 44.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.1e-60 237.7 269 48.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.1e-60 237.7 274 48.2
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.4e-60 236.5 294 46.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.2e-60 235.3 274 47.4
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 5.2e-60 235.3 278 47.5
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 8.9e-60 234.6 273 48.4
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.0e-59 233.4 269 49.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.0e-59 233.4 292 46.6
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.0e-59 233.4 284 48.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.6e-59 233.0 273 49.5
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.4e-59 232.6 156 70.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.8e-59 231.9 273 49.5
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 7.6e-59 231.5 280 47.5
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 7.6e-59 231.5 275 47.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 7.6e-59 231.5 292 46.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 7.6e-59 231.5 294 45.6
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 9.9e-59 231.1 279 46.6
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.3e-58 230.7 280 47.5
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-58 229.6 275 47.3
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 3.8e-58 229.2 271 46.9
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 3.8e-58 229.2 271 46.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.8e-58 229.2 301 43.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.9e-58 228.8 272 46.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 6.4e-58 228.4 272 46.3
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.4e-58 228.0 265 46.8
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 8.4e-58 228.0 269 48.7
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-57 227.3 272 46.3
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.1e-56 223.4 225 52.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 7.8e-56 221.5 270 45.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.0e-55 221.1 276 44.9
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-55 219.9 274 45.6
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.6e-55 218.4 262 47.3
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 8.7e-55 218.0 277 45.8
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 8.7e-55 218.0 275 44.7
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.7e-55 218.0 277 46.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.5e-54 216.5 267 46.1
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.5e-54 216.5 277 44.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.3e-54 216.1 280 42.9
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.3e-54 216.1 280 42.9
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.3e-54 216.1 280 42.9
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 9.6e-54 214.5 321 42.1
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-53 214.2 280 42.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.6e-53 213.8 292 41.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-52 209.9 280 41.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.3e-52 208.8 207 51.2
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 5.3e-52 208.8 285 44.6
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.9e-52 208.4 202 54.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 6.9e-52 208.4 279 41.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-51 207.6 274 45.3
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.2e-51 207.6 266 45.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.6e-51 206.5 300 41.3
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.4e-51 205.7 206 52.9
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.4e-51 205.7 273 42.9
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 3.8e-50 202.6 306 38.6
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.8e-50 202.6 269 44.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.4e-50 201.8 235 47.7
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.4e-49 198.7 286 44.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 7.1e-49 198.4 278 42.8
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 9.3e-49 198.0 266 41.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.3e-47 193.4 187 55.1
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 2.8e-45 186.4 182 53.8
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.5e-43 180.6 189 51.3
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.0e-43 180.3 277 42.2
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.4e-42 174.9 182 52.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 5.4e-41 172.2 182 48.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.6e-40 169.1 320 35.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.9e-39 166.0 229 44.1
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.5e-38 164.1 190 47.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.0e-36 154.8 181 45.3
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-33 147.5 178 46.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.2e-33 146.0 190 41.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 5.5e-33 145.6 120 51.7
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.1e-33 145.2 178 45.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.6e-27 125.2 280 32.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 6.1e-24 115.5 112 50.0
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.5e-22 110.9 187 39.6
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.3e-22 109.4 139 43.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.1e-17 94.7 96 57.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.5e-17 93.6 59 71.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.2e-17 93.2 139 38.1
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-16 90.9 79 54.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.6e-16 89.4 199 30.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 3.9e-15 86.3 89 55.1
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.2e-13 80.5 84 50.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.1e-12 76.6 95 45.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.3e-12 75.9 233 28.3
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.3e-12 75.9 92 46.7
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.5e-11 74.3 95 45.3
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.0e-11 73.9 106 32.1
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 2.6e-11 73.6 84 50.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.3e-10 71.2 112 33.9
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 5.7e-06 55.8 56 44.6
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 7.4e-06 55.5 100 31.0


User provided reference genes

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