Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 2.8e-183 645.2 334 100.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 2.6e-112 409.5 325 64.9
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 2.8e-111 406.0 332 64.2
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 5.9e-109 398.3 331 61.6
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.0e-105 385.6 338 61.8
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 4.0e-105 385.6 335 60.6
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 4.8e-103 378.6 335 60.3
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 4.1e-102 375.6 334 60.5
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 5.0e-100 368.6 338 59.2
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 3.6e-98 362.5 335 57.0
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 3.6e-98 362.5 328 58.8
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 1.5e-96 357.1 328 57.6
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 2.2e-95 353.2 337 58.8
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 3.7e-95 352.4 333 56.5
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 4.8e-95 352.1 328 56.4
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 1.1e-94 350.9 337 57.6
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.4e-94 350.5 336 57.4
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 1.4e-94 350.5 327 58.7
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 2.4e-94 349.7 333 56.8
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 3.1e-94 349.4 329 55.9
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 9.1e-94 347.8 335 55.2
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 2.7e-93 346.3 324 57.4
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 3.5e-93 345.9 328 57.0
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.0e-92 344.4 334 55.4
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 1.3e-92 344.0 336 57.1
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 3.8e-92 342.4 329 55.3
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 1.9e-91 340.1 335 54.9
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 2.5e-91 339.7 321 57.6
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 3.2e-91 339.3 327 57.8
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.5e-91 338.6 335 56.4
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 5.5e-91 338.6 325 54.5
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 7.2e-91 338.2 329 54.7
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 1.2e-90 337.4 336 56.5
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.6e-90 337.0 335 56.1
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.7e-90 335.5 330 55.8
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 6.1e-90 335.1 329 56.5
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 6.1e-90 335.1 325 54.8
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 6.1e-90 335.1 332 54.2
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 4.0e-89 332.4 323 55.1
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 4.0e-89 332.4 323 55.1
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 6.8e-89 331.6 325 54.5
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 2.0e-88 330.1 335 53.4
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 5.7e-88 328.6 334 55.7
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 9.8e-88 327.8 329 53.5
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 1.3e-87 327.4 329 56.2
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 1.7e-87 327.0 329 56.8
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 2.2e-87 326.6 330 54.5
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 1.1e-86 324.3 337 54.3
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 1.4e-86 323.9 324 56.2
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 1.8e-86 323.6 327 54.1
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 2.4e-86 323.2 330 56.7
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 4.1e-86 322.4 329 55.6
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 7.0e-86 321.6 332 54.8
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.2e-85 320.9 335 50.1
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.2e-85 320.9 332 54.2
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 2.7e-85 319.7 337 53.4
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 2.7e-85 319.7 328 55.8
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.7e-85 319.7 329 55.0
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 5.0e-84 315.5 323 53.9
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 6.6e-84 315.1 335 54.0
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 3.3e-83 312.8 318 51.9
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 4.3e-83 312.4 325 53.5
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 4.3e-83 312.4 339 52.8
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 5.6e-83 312.0 336 52.4
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 9.5e-83 311.2 336 51.8
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 9.5e-83 311.2 333 52.0
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.2e-82 310.8 312 56.7
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 2.8e-82 309.7 329 52.6
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 1.5e-80 303.9 332 52.4
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 2.6e-80 303.1 337 51.9
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 7.0e-78 295.0 332 52.1
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 2.3e-76 290.0 334 50.6
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.1e-75 287.7 290 53.8
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 1.5e-75 287.3 335 46.9
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 1.2e-74 284.3 328 50.9
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 3.1e-73 279.6 322 49.1
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 4.0e-73 279.3 329 49.5
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 5.2e-73 278.9 328 50.0
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 8.3e-71 271.6 326 49.7
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 1.4e-70 270.8 329 49.8
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 3.2e-70 269.6 255 59.2
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 4.1e-70 269.2 325 48.9
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 4.1e-70 269.2 325 48.9
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 1.2e-69 267.7 328 49.1
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 2.7e-69 266.5 327 48.0
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 3.5e-69 266.2 328 48.2
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 4.6e-69 265.8 270 51.5
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 1.0e-68 264.6 328 48.5
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 3.9e-68 262.7 330 48.5
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 3.6e-66 256.1 339 49.3
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 3.4e-64 249.6 331 46.2
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.9e-63 246.5 241 57.7
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.9e-63 246.5 241 57.7
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 2.9e-63 246.5 244 57.0
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 4.6e-61 239.2 303 48.5
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 3.0e-60 236.5 302 48.0
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 9.9e-56 221.5 334 41.6
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 8.6e-52 208.4 337 39.8
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 8.9e-49 198.4 327 41.3
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 6.4e-47 192.2 300 44.3
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.5e-40 171.0 179 51.4
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 3.8e-39 166.4 327 34.9
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.9e-38 164.1 240 44.2
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.0e-33 146.4 99 72.7
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.0e-33 146.4 99 72.7
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 6.9e-33 145.6 232 39.7
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 1.2e-29 134.8 153 51.6
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 1.3e-28 131.3 360 30.3
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 1.5e-27 127.9 175 45.1
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 3.3e-27 126.7 112 58.9
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 4.8e-26 122.9 312 33.7
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 8.1e-26 122.1 89 66.3
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 5.3e-25 119.4 216 40.3
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 9.6e-19 98.6 131 42.7
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 2.8e-18 97.1 330 27.3
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 1.0e-15 88.6 99 45.5


User provided reference genes

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