Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 4.2e-110 401.4 201 100.0
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 2.9e-79 298.9 199 75.9
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 1.2e-77 293.5 200 77.0
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.6e-77 293.1 199 74.9
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 6.7e-76 287.7 200 75.5
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 8.8e-76 287.3 200 73.0
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 2.3e-63 246.1 198 63.6
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.6e-61 238.8 188 68.1
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 4.7e-61 238.4 201 62.2
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 6.8e-60 234.6 197 62.4
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.9e-60 234.2 198 63.6
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.9e-60 234.2 199 63.3
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 3.4e-59 232.3 197 61.9
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 3.4e-59 232.3 200 62.5
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 4.4e-59 231.9 199 59.3
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.7e-58 229.9 200 61.0
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 3.7e-58 228.8 215 57.2
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 4.9e-58 228.4 199 58.8
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 6.3e-58 228.0 197 61.4
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.4e-57 226.9 199 58.8
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 1.8e-57 226.5 197 60.9
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 2.4e-57 226.1 197 60.9
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 3.5e-56 222.2 197 61.4
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.3e-55 220.3 200 58.5
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.3e-55 220.3 200 60.0
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.1e-54 217.2 185 59.5
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 4.3e-54 215.3 200 55.0
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 3.6e-53 212.2 197 54.3
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 4.7e-53 211.8 186 59.1
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 1.8e-52 209.9 198 54.5
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 4.0e-52 208.8 199 53.8
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 5.2e-52 208.4 187 57.2
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 5.2e-52 208.4 199 53.8
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 8.9e-52 207.6 197 57.4
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.0e-51 206.5 197 54.8
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.6e-51 206.1 197 55.8
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.6e-51 206.1 203 56.7
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 5.8e-51 204.9 197 56.3
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.5e-51 204.5 199 55.8
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.5e-51 204.5 199 55.8
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.3e-50 203.8 199 53.8
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.3e-50 203.8 197 54.8
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.7e-50 203.4 199 56.8
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 2.2e-50 203.0 197 57.4
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 2.9e-50 202.6 213 54.0
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 2.9e-50 202.6 217 51.2
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.7e-50 202.2 197 54.8
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 4.9e-50 201.8 203 56.7
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 8.3e-50 201.1 204 54.4
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 8.3e-50 201.1 197 56.9
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 1.1e-49 200.7 199 55.3
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 1.4e-49 200.3 202 53.0
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.9e-49 199.9 212 53.8
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 2.4e-49 199.5 197 55.3
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 7.0e-49 198.0 197 56.3
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 7.0e-49 198.0 197 53.3
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.2e-48 197.2 185 56.2
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 1.2e-48 197.2 213 51.6
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.2e-48 197.2 197 52.3
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 4.6e-48 195.3 199 53.8
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.6e-48 195.3 199 53.8
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 6.0e-48 194.9 199 54.3
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 6.0e-48 194.9 202 53.5
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 6.0e-48 194.9 203 54.7
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 2.3e-47 193.0 203 55.2
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 2.3e-47 193.0 199 55.8
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 3.0e-47 192.6 197 52.8
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 3.9e-47 192.2 209 51.7
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 1.9e-46 189.9 200 51.0
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 1.9e-46 189.9 210 50.0
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.3e-46 188.7 199 52.8
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 9.5e-46 187.6 200 53.0
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.6e-45 186.8 199 51.8
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 6.2e-45 184.9 200 48.5
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 8.0e-45 184.5 199 52.8
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 1.1e-44 184.1 185 50.8
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 3.1e-44 182.6 199 53.8
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 4.0e-44 182.2 170 54.7
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 6.8e-44 181.4 200 48.5
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 6.8e-44 181.4 186 54.3
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 8.9e-44 181.0 197 51.3
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.2e-43 180.6 201 52.2
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 1.5e-43 180.3 197 51.8
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.5e-43 180.3 197 51.8
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 2.0e-43 179.9 197 51.3
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 3.4e-43 179.1 197 49.2
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 5.8e-43 178.3 185 55.7
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 7.5e-43 177.9 200 48.5
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 3.7e-42 175.6 209 48.3
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 1.4e-41 173.7 199 49.7
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 4.1e-41 172.2 199 52.3
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 2.7e-40 169.5 199 49.2
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 3.0e-39 166.0 199 49.2
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 3.3e-38 162.5 193 50.3
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 8.1e-37 157.9 198 48.0
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 2.3e-36 156.4 159 56.0
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 2.3e-36 156.4 198 45.5
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 2.0e-35 153.3 187 48.7
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.9e-33 146.7 185 45.9
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.3e-31 140.6 185 47.6
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 3.0e-31 139.4 208 42.8
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.6e-29 133.7 157 49.7
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 2.1e-29 133.3 143 54.5
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 4.4e-27 125.6 172 39.5
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 1.3e-26 124.0 121 51.2
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 6.2e-21 105.1 157 41.4
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 8.1e-21 104.8 201 38.3
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 4.0e-20 102.4 167 37.7
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 5.3e-20 102.1 199 34.7
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 2.6e-19 99.8 186 35.5
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 3.4e-19 99.4 91 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 5.8e-19 98.6 173 35.8
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 5.4e-17 92.0 66 68.2
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 2.5e-14 83.2 158 32.9
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 4.3e-14 82.4 105 45.7
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 2.9e-10 69.7 226 24.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 8.4e-10 68.2 84 50.0
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 1.3e-07 60.8 50 58.0
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 1.3e-07 60.8 82 43.9
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 3.0e-07 59.7 193 28.5


User provided reference genes

Program Settings