Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 5.0e-94 347.8 182 100.0
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 2.7e-71 272.3 182 78.0
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 6.1e-60 234.6 141 84.4
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 2.1e-39 166.4 137 65.7
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 3.1e-35 152.5 119 64.7
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 1.4e-24 117.1 168 39.3
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 2.4e-24 116.3 183 36.1
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 9.6e-21 104.4 183 35.5
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 1.2e-18 97.4 138 38.4
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.8e-18 95.1 141 37.6
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.9e-18 94.4 141 36.2
Lj7P396T52 Lonicera japonica HOM05D008183 ORTHO05D007254 9.3e-16 87.8 106 41.5
Lj9P645T45 Lonicera japonica HOM05D008183 ORTHO05D007254 2.7e-15 86.3 125 42.4
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.5e-15 85.9 133 36.8
Lj1P1006T30 Lonicera japonica HOM05D008183 ORTHO05D007254 1.8e-14 83.6 138 38.4
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-14 82.4 164 34.1
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.1e-14 82.0 141 34.8
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.7e-14 81.6 173 33.5
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.7e-14 81.6 137 37.2
Lj5P293T5 Lonicera japonica HOM05D008183 ORTHO05D007254 8.7e-14 81.3 91 48.4
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.5e-13 80.5 140 35.0
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.5e-13 80.5 142 36.6
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.9e-13 80.1 141 32.6
Lj1P880T38 Lonicera japonica HOM05D008183 ORTHO05D007254 2.5e-13 79.7 105 39.0
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.5e-13 79.7 141 35.5
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.3e-13 79.3 141 35.5
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.3e-13 79.3 141 35.5
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 5.6e-13 78.6 101 36.6
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.6e-13 78.6 141 34.0
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.4e-13 78.2 142 33.1
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.4e-13 78.2 130 34.6
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 6.2e-12 75.1 141 34.0
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 1.1e-11 74.3 90 40.0
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 1.4e-11 73.9 117 34.2
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 5.3e-11 72.0 116 36.2
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.3e-11 72.0 116 35.3
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 9.0e-11 71.2 125 33.6
Eucgr.B00966 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.5e-10 70.5 137 32.8
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.0e-10 70.1 129 36.4
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-10 69.7 102 37.3
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.6e-10 69.7 118 33.1
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 2.6e-10 69.7 126 34.1
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.5e-10 68.9 141 32.6
Lj9P695T39 Lonicera japonica HOM05D008183 ORTHO05D007254 7.6e-10 68.2 89 39.3
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.7e-09 67.0 132 28.8
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.2e-09 66.6 180 30.6
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 3.8e-09 65.9 138 30.4
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.4e-09 65.1 141 36.2
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-08 64.3 137 32.8
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-08 64.3 149 32.9
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.4e-08 63.9 141 36.9
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 1.9e-08 63.5 142 31.7
Lj8P115T49 Lonicera japonica HOM05D008183 ORTHO05D007254 1.9e-08 63.5 105 36.2
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 3.2e-08 62.8 142 32.4
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.2e-08 62.8 140 28.6
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 4.2e-08 62.4 81 39.5
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 4.2e-08 62.4 108 31.5
TWI81G0012 Tripterygium wilfordii HOM05D000155 ORTHO05D000022 4.2e-08 62.4 133 27.1
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.5e-08 62.0 139 30.2
COL.COLO4_24033 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.5e-08 62.0 144 29.2
FvH4_3g05211 Fragaria vesca HOM05D000003 ORTHO05D000022 7.1e-08 61.6 134 27.6
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.3e-08 61.2 152 29.6
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-07 60.8 139 29.5
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 1.6e-07 60.5 77 40.3
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 1.6e-07 60.5 137 34.3
Lj3A1052T27 Lonicera japonica HOM05D008183 ORTHO05D007254 2.1e-07 60.1 124 31.5
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 2.7e-07 59.7 121 29.8
arahy.Tifrunner.gnm1.ann1.0Y1AJC Arachis hypogaea HOM05D027442 ORTHO05D000167 6.0e-07 58.5 131 32.8
FvH4_3g19950 Fragaria vesca HOM05D002732 ORTHO05D002955 6.0e-07 58.5 101 26.7
Eucgr.C01564 Eucalyptus grandis HOM05D008183 ORTHO05D007254 7.9e-07 58.2 150 30.0
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.0e-06 57.8 148 31.1
COL.COLO4_04041 Corchorus olitorius HOM05D008133 ORTHO05D007254 1.3e-06 57.4 146 29.5
Lju225C5T9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.3e-06 57.4 68 42.6
COL.COLO4_06385 Corchorus olitorius HOM05D000395 ORTHO05D009449 1.8e-06 57.0 130 26.2
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 2.3e-06 56.6 114 35.1
MBI04_g21754_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.0e-06 56.2 87 40.2
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 3.0e-06 56.2 138 29.7
Prupe.3G190000 Prunus persica HOM05D008133 ORTHO05D009449 3.0e-06 56.2 121 33.1
Aqoxy4G00752 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.9e-06 55.8 142 27.5
COL.COLO4_28853 Corchorus olitorius HOM05D008133 ORTHO05D009449 3.9e-06 55.8 123 30.9
FvH4_5g21911 Fragaria vesca HOM05D000003 ORTHO05D000022 3.9e-06 55.8 134 27.6
COL.COLO4_35386 Corchorus olitorius HOM05D008133 ORTHO05D009449 5.1e-06 55.5 144 31.2
AL7G15770 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 8.7e-06 54.7 90 40.0
SHI31029 Sapria himalayana HOM05D004990 ORTHO05D000022 8.7e-06 54.7 99 32.3


User provided reference genes

Program Settings