Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 2.1e-186 655.6 339 100.0
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 5.6e-107 391.7 345 62.3
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.2e-106 390.6 341 62.5
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.8e-105 386.7 290 68.3
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.5e-104 383.6 340 59.4
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 2.0e-104 383.3 321 65.1
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 2.6e-104 382.9 343 60.6
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 4.4e-104 382.1 354 59.9
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.7e-103 380.2 343 60.6
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 4.9e-103 378.6 340 60.0
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.9e-102 376.7 342 60.5
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 4.2e-102 375.6 345 61.2
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 7.1e-102 374.8 338 59.2
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 2.7e-101 372.9 341 60.1
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 2.7e-101 372.9 303 63.7
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 4.6e-101 372.1 340 59.1
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 6.0e-101 371.7 294 64.6
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 7.8e-101 371.3 265 69.4
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.0e-100 370.9 309 63.8
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.7e-100 370.2 309 63.8
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.7e-100 370.2 288 65.3
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.0e-100 369.4 266 69.5
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 3.9e-100 369.0 265 69.8
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 5.1e-100 368.6 274 69.3
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 8.7e-100 367.9 268 67.5
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.1e-99 367.5 265 69.8
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 1.9e-99 366.7 302 63.2
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.5e-99 366.3 304 64.5
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.3e-99 365.9 274 66.4
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 4.3e-99 365.5 281 65.8
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 4.3e-99 365.5 324 59.9
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 5.6e-99 365.2 296 63.5
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 7.3e-99 364.8 267 67.4
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 9.6e-99 364.4 269 67.3
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.6e-98 363.6 339 58.1
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 2.8e-98 362.8 266 68.8
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 3.6e-98 362.5 302 63.2
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 4.7e-98 362.1 341 57.2
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 8.1e-98 361.3 300 61.7
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 8.1e-98 361.3 263 67.3
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.8e-97 360.1 266 68.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.8e-97 360.1 274 67.2
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 2.4e-97 359.8 319 59.6
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.1e-97 359.4 335 57.9
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 5.3e-97 358.6 286 64.3
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 6.9e-97 358.2 266 66.2
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 9.0e-97 357.8 261 69.3
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.2e-96 357.5 258 69.0
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 2.0e-96 356.7 273 66.7
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 2.6e-96 356.3 269 66.2
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 3.4e-96 355.9 306 60.8
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 3.4e-96 355.9 295 62.4
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 7.6e-96 354.8 341 55.4
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 9.9e-96 354.4 269 66.5
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 9.9e-96 354.4 261 67.4
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 2.2e-95 353.2 274 65.3
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 2.9e-95 352.8 303 61.1
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 6.4e-95 351.7 276 65.2
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 8.4e-95 351.3 286 62.6
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.4e-94 350.5 260 66.2
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.7e-93 346.3 266 66.9
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 3.5e-93 345.9 301 60.1
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.9e-92 342.4 350 54.6
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 8.7e-92 341.3 302 60.3
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 8.7e-92 341.3 271 62.4
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 8.7e-92 341.3 343 54.5
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.1e-91 340.9 199 81.9
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 7.3e-91 338.2 273 61.9
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 2.8e-90 336.3 263 64.6
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 6.2e-90 335.1 261 65.5
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.4e-89 334.0 311 56.3
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.8e-89 333.6 285 60.4
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 2.4e-89 333.2 241 67.6
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 3.4e-88 329.3 265 62.6
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 1.4e-86 323.9 273 61.9
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.9e-86 323.6 344 53.2
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.2e-85 320.9 258 61.2
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.0e-84 317.8 278 57.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 4.8e-82 308.9 343 51.9
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 1.4e-81 307.4 264 60.6
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.4e-81 307.4 264 60.6
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 3.1e-81 306.2 274 58.4
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.2e-80 304.3 344 50.9
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.2e-80 304.3 344 50.9
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 2.6e-80 303.1 339 51.9
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 3.4e-80 302.8 265 60.0
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 4.5e-80 302.4 342 52.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 1.7e-79 300.4 352 49.7
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 2.2e-79 300.1 221 70.1
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.1e-78 297.7 312 55.4
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 1.4e-78 297.4 324 51.5
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.6e-77 293.9 325 50.8
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 2.7e-77 293.1 223 64.6
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 3.5e-77 292.7 324 50.9
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 3.5e-77 292.7 335 51.0
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 2.3e-76 290.0 264 57.6
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 3.9e-76 289.3 191 74.3
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 6.2e-74 282.0 359 47.1
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 3.4e-72 276.2 315 49.8
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 3.4e-72 276.2 295 49.5
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 4.9e-71 272.3 267 53.6
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 1.4e-70 270.8 261 52.1
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 2.7e-69 266.5 223 66.8
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.9e-67 260.4 191 66.5
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 4.3e-67 259.2 219 58.9
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 4.1e-65 252.7 265 49.4
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 3.4e-64 249.6 191 63.4
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 6.5e-63 245.4 222 64.0
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.9e-62 243.8 260 48.8
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 5.7e-59 232.3 180 68.3
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.2e-56 224.6 146 73.3
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 2.6e-56 223.4 183 60.1
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 2.3e-52 210.3 139 69.8
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.5e-51 207.6 236 50.0
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 5.3e-49 199.1 142 69.7
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.5e-38 162.5 146 58.2
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 1.2e-37 161.4 182 40.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 2.9e-31 140.2 152 55.9
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.0e-27 127.5 238 34.0
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 2.4e-25 120.6 68 86.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.0e-20 103.2 137 46.0
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 4.1e-09 66.6 36 75.0
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.2e-08 65.1 102 43.1
Actinidia23989 Actinidia chinensis HOM05D006179 ORTHO05D008370 3.0e-07 60.5 69 46.4
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 2.5e-06 57.4 95 35.8


User provided reference genes

Program Settings