Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 8.5e-76 287.0 148 100.0
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.2e-24 117.1 67 91.0
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.9e-22 109.8 63 84.1
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.4e-22 109.4 63 84.1
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.4e-22 109.4 63 85.7
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 3.2e-22 109.0 63 85.7
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 3.2e-22 109.0 63 87.3
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 3.2e-22 109.0 63 85.7
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 9.2e-22 107.5 70 78.6
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.2e-21 107.1 63 82.5
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.6e-21 106.7 63 82.5
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.1e-21 106.3 63 82.5
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.7e-21 105.9 63 82.5
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.6e-21 105.1 63 81.0
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 6.0e-21 104.8 62 85.5
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.0e-20 104.0 63 81.0
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.0e-20 104.0 62 83.9
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.3e-20 103.6 63 81.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.3e-20 103.6 63 82.5
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.3e-20 102.8 63 81.0
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.3e-20 102.8 63 77.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.3e-20 102.8 63 77.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.3e-20 102.8 63 81.0
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 3.0e-20 102.4 63 81.0
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.0e-20 102.4 63 81.0
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 3.9e-20 102.1 63 81.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 5.1e-20 101.7 63 79.4
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 5.1e-20 101.7 63 79.4
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 6.6e-20 101.3 63 79.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 8.6e-20 100.9 63 77.8
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 8.6e-20 100.9 63 77.8
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 8.6e-20 100.9 62 79.0
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.5e-19 100.1 64 78.1
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.5e-19 100.1 64 79.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.5e-19 99.4 63 74.6
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.5e-19 99.4 63 77.8
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 2.5e-19 99.4 63 76.2
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.3e-19 99.0 62 79.0
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 3.3e-19 99.0 63 77.8
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 3.3e-19 99.0 63 76.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.3e-19 99.0 71 67.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.3e-19 99.0 63 76.2
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.3e-19 98.6 63 81.0
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 5.6e-19 98.2 62 74.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 5.6e-19 98.2 63 76.2
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.6e-19 98.2 62 79.0
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 74.6
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 74.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 7.3e-19 97.8 61 77.0
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 7.3e-19 97.8 65 72.3
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 81.0
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 74.6
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 74.6
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 77.8
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 7.3e-19 97.8 63 76.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 7.3e-19 97.8 64 75.0
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 9.5e-19 97.4 63 73.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 9.5e-19 97.4 63 76.2
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 9.5e-19 97.4 63 76.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 9.5e-19 97.4 64 73.4
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 9.5e-19 97.4 63 76.2
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 9.5e-19 97.4 68 73.5
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 9.5e-19 97.4 63 76.2
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.6e-18 96.7 63 74.6
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.6e-18 96.7 63 77.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.6e-18 96.7 63 77.8
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.6e-18 96.7 63 76.2
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.1e-18 96.3 63 76.2
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.8e-18 95.9 63 76.2
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.8e-18 95.9 62 75.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.8e-18 95.9 62 75.8
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.8e-18 95.9 62 77.4
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.6e-18 95.5 63 76.2
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.7e-18 95.1 62 75.8
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 4.7e-18 95.1 62 75.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 6.2e-18 94.7 63 74.6
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.2e-18 94.7 62 77.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.2e-18 94.7 62 74.2
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.2e-18 94.7 62 74.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.1e-17 94.0 62 79.0
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.4e-17 93.6 62 74.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.4e-17 93.6 63 71.4
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.4e-17 93.6 63 73.0
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.8e-17 93.2 63 73.0
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.8e-17 93.2 63 73.0
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.3e-17 92.8 63 73.0
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.3e-17 92.8 63 73.0
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.3e-17 92.8 63 73.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.1e-17 92.4 63 71.4
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.1e-17 92.4 63 71.4
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 3.1e-17 92.4 61 78.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 6.8e-17 91.3 60 71.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.2e-16 90.5 62 71.0
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.2e-16 90.5 65 67.7
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.4e-16 89.0 74 64.9
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 5.8e-16 88.2 74 63.5
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.3e-15 87.0 64 71.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.9e-15 85.9 61 68.9
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 4.9e-15 85.1 67 61.2
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.4e-14 82.8 64 64.1
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 7.1e-14 81.3 61 68.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 9.2e-14 80.9 63 63.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 7.8e-13 77.8 63 66.7
Lj4A836T53 Lonicera japonica HOM05D001538 ORTHO05D000007 3.0e-12 75.9 53 75.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.1e-12 75.1 63 63.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.5e-11 73.6 65 56.9
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.2e-10 70.5 82 50.0
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.6e-10 68.9 36 88.9
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.6e-10 68.9 51 66.7
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.2e-09 65.1 61 62.3
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 6.8e-09 64.7 91 45.1
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 8.9e-09 64.3 100 43.0
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.5e-08 63.5 93 44.1
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 3.4e-08 62.4 94 42.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 6.4e-07 58.2 55 65.5


User provided reference genes

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