Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C52T9 Lonicera japonica HOM05D000186 ORTHO05D029062 4.2e-30 134.0 67 100.0
Dinv01964 Davidia involucrata HOM05D000186 ORTHO05D006806 6.9e-17 90.1 61 80.3
MSTRG.5476 Avicennia marina HOM05D000186 ORTHO05D006806 9.0e-17 89.7 60 78.3
CSS0042957 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D006806 1.5e-16 89.0 60 80.0
Lsat_1_v5_gn_9_40241 Lactuca sativa HOM05D000186 ORTHO05D006806 3.4e-16 87.8 60 75.0
SGA_v2.0_scaffold85G26583 Striga asiatica HOM05D000186 ORTHO05D006806 9.9e-16 86.3 63 76.2
Actinidia29001 Actinidia chinensis HOM05D000186 ORTHO05D006806 1.3e-15 85.9 62 80.6
Solyc10g074650.2 Solanum lycopersicum HOM05D000186 ORTHO05D006806 1.7e-15 85.5 63 73.0
Sopen10g027140 Solanum pennellii HOM05D000186 ORTHO05D006806 1.7e-15 85.5 63 73.0
PSO339G6692 Papaver somniferum HOM05D000186 ORTHO05D006806 2.2e-15 85.1 64 67.2
PSO384G5073 Papaver somniferum HOM05D000186 ORTHO05D006806 2.2e-15 85.1 64 67.2
TAR633G2554 Trochodendron aralioides HOM05D000186 ORTHO05D006806 2.9e-15 84.7 59 74.6
GSVIVG01029827001 Vitis vinifera HOM05D000186 ORTHO05D006806 2.9e-15 84.7 67 68.7
Phvul.008G076900 Phaseolus vulgaris HOM05D000186 ORTHO05D006806 4.9e-15 84.0 58 77.6
ECA247G0468 Erigeron canadensis HOM05D002393 ORTHO05D002845 6.4e-15 83.6 56 76.8
Sed0003702 Sechium edule HOM05D000186 ORTHO05D006806 6.4e-15 83.6 68 69.1
Sed0018545 Sechium edule HOM05D000186 ORTHO05D006806 6.4e-15 83.6 62 71.0
VMungo1383G2067 Vigna mungo HOM05D000186 ORTHO05D006806 6.4e-15 83.6 58 77.6
ClCG04G005130 Citrullus lanatus HOM05D000186 ORTHO05D006806 1.1e-14 82.8 59 74.6
MELO3C025283.2 Cucumis melo HOM05D000186 ORTHO05D006806 1.4e-14 82.4 59 72.9
Glyma.18G220200 Glycine max HOM05D000186 ORTHO05D006806 1.4e-14 82.4 58 75.9
CAN.G751.5 Capsicum annuum HOM05D000186 ORTHO05D006806 1.9e-14 82.0 61 73.8
CsaV3_4G013490 Cucumis sativus L. HOM05D000186 ORTHO05D006806 1.9e-14 82.0 59 72.9
Cfa016975 Carpinus fangiana HOM05D000186 ORTHO05D006806 2.4e-14 81.6 63 71.4
HanXRQChr10g0286521 Helianthus annuus HOM05D000186 ORTHO05D006806 2.4e-14 81.6 65 67.7
Nitab4.5_0012032g0010 Nicotiana tabacum HOM05D000186 ORTHO05D006806 3.2e-14 81.3 61 68.9
arahy.Tifrunner.gnm1.ann1.H95TME Arachis hypogaea HOM05D000186 ORTHO05D006806 4.2e-14 80.9 58 74.1
arahy.Tifrunner.gnm1.ann1.L7YTM2 Arachis hypogaea HOM05D000186 ORTHO05D006806 4.2e-14 80.9 58 74.1
CiPaw.10G167500 Carya illinoinensis HOM05D000186 ORTHO05D006806 7.1e-14 80.1 58 75.9
Nn5g26724 Nelumbo nucifera HOM05D000186 ORTHO05D006806 7.1e-14 80.1 59 74.6
Nitab4.5_0001700g0050 Nicotiana tabacum HOM05D000186 ORTHO05D006806 7.1e-14 80.1 65 64.6
Rhsim05G0185300 Rhododendron simsii HOM05D000186 ORTHO05D006806 7.1e-14 80.1 54 79.6
TPR.G3223 Trifolium pratense HOM05D000186 ORTHO05D006806 7.1e-14 80.1 58 74.1
CANSAT21G1223 Cannabis sativa HOM05D000186 ORTHO05D006806 1.6e-13 79.0 66 71.2
Psat3g116680 Pisum sativum HOM05D000186 ORTHO05D006806 1.6e-13 79.0 58 72.4
vmacro20097 Vaccinium macrocarpon HOM05D000186 ORTHO05D006806 1.6e-13 79.0 54 79.6
Glyma.09G269900 Glycine max HOM05D000186 ORTHO05D006806 3.5e-13 77.8 58 69.0
Lj1g0025586 Lotus japonicus HOM05D000186 ORTHO05D006806 3.5e-13 77.8 56 75.0
Medtr7g074680 Medicago truncatula HOM05D000186 ORTHO05D006806 4.6e-13 77.4 58 69.0
Cc06_g00020 Coffea canephora HOM05D000186 ORTHO05D029062 7.9e-13 76.6 49 83.7
Oeu063838.1 Olea europaea HOM05D000186 ORTHO05D006806 7.9e-13 76.6 63 73.0
MD04G1181600 Malus domestica HOM05D000186 ORTHO05D006806 1.3e-12 75.9 65 64.6
Sc02g0000130 Simmondsia chinensis HOM05D000186 ORTHO05D029062 1.3e-12 75.9 59 71.2
Lalb_Chr19g0123851 Lupinus albus HOM05D000186 ORTHO05D006806 2.3e-12 75.1 47 83.0
SGA_v2.0_scaffold373G50206 Striga asiatica HOM05D000186 ORTHO05D006806 3.9e-12 74.3 56 73.2
MD12G1196400 Malus domestica HOM05D000186 ORTHO05D006806 8.7e-12 73.2 65 60.0
Manes.08G165700 Manihot esculenta HOM05D000186 ORTHO05D006806 8.7e-12 73.2 60 68.3
Lalb_Chr01g0024051 Lupinus albus HOM05D000186 ORTHO05D006806 2.5e-11 71.6 51 72.5
QL07p030191 Quercus lobata HOM05D000186 ORTHO05D006806 2.5e-11 71.6 49 71.4
QL07p030837 Quercus lobata HOM05D000186 ORTHO05D006806 2.5e-11 71.6 49 71.4
Haze_21234 Corylus avellana HOM05D000186 ORTHO05D006806 3.3e-11 71.2 48 79.2
COL.COLO4_08813 Corchorus olitorius HOM05D000186 ORTHO05D006806 5.6e-11 70.5 67 61.2
Migut.J00004 Erythranthe guttata HOM05D000186 ORTHO05D006806 7.4e-11 70.1 59 67.8
Prupe.6G301000 Prunus persica HOM05D000186 ORTHO05D006806 7.4e-11 70.1 63 61.9
HanXRQChr15g0464651 Helianthus annuus HOM05D000186 ORTHO05D006806 9.6e-11 69.7 53 69.8
Aqoxy2G00610 Aquilegia oxysepala HOM05D000186 ORTHO05D006806 1.3e-10 69.3 44 79.5
Manes.09G119300 Manihot esculenta HOM05D000186 ORTHO05D006806 2.1e-10 68.6 61 60.7
Ah.12g061270 Amaranthus hybridus HOM05D000186 ORTHO05D006806 6.2e-10 67.0 67 55.2
Gohir.D09G215600 Gossypium hirsutum HOM05D000186 ORTHO05D006806 6.2e-10 67.0 48 70.8
THA.LOC104806306 Tarenaya hassleriana HOM05D000186 ORTHO05D006806 6.2e-10 67.0 61 62.3
AUR62037720 Chenopodium quinoa HOM05D000186 ORTHO05D006806 8.2e-10 66.6 68 52.9
RcHm_v2.0_Chr3g0459281 Rosa chinensis HOM05D000186 ORTHO05D006806 8.2e-10 66.6 47 70.2
Gohir.A09G213674 Gossypium hirsutum HOM05D000186 ORTHO05D006806 1.1e-09 66.2 48 70.8
Thecc.04G063300 Theobroma cacao HOM05D000186 ORTHO05D006806 1.1e-09 66.2 50 72.0
Ah.10g024810 Amaranthus hybridus HOM05D000186 ORTHO05D006806 1.4e-09 65.9 42 76.2
Atru.chr8.16 Acer truncatum HOM05D000186 ORTHO05D006806 1.8e-09 65.5 54 68.5
FvH4_6g09030 Fragaria vesca HOM05D000186 ORTHO05D006806 1.8e-09 65.5 47 68.1
FAN02G1194 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.8e-09 65.5 47 68.1
FAN05G4446 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.8e-09 65.5 47 68.1
FAN09G1435 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.8e-09 65.5 47 68.1
FAN14G3857 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.8e-09 65.5 47 68.1
Gohir.D02G112200 Gossypium hirsutum HOM05D000186 ORTHO05D006806 1.8e-09 65.5 49 73.5
Gorai.005G129100 Gossypium raimondii HOM05D000186 ORTHO05D006806 1.8e-09 65.5 49 73.5
AUR62020285 Chenopodium quinoa HOM05D000186 ORTHO05D006806 2.4e-09 65.1 48 68.8
Potri.016G143966 Populus trichocarpa HOM05D000186 ORTHO05D006806 3.1e-09 64.7 49 75.5
PGR004G1439 Punica granatum HOM05D000186 ORTHO05D006806 3.1e-09 64.7 66 57.6
Gohir.A02G089300 Gossypium hirsutum HOM05D000186 ORTHO05D006806 4.0e-09 64.3 49 71.4
Oeu013183.3 Olea europaea HOM05D000186 ORTHO05D006806 4.0e-09 64.3 52 69.2
EL10Ac2g02411 Beta vulgaris HOM05D000186 ORTHO05D006806 5.3e-09 63.9 37 83.8
Gorai.006G236100 Gossypium raimondii HOM05D000186 ORTHO05D006806 5.3e-09 63.9 48 68.8
Ciclev10011265m.g Citrus clementina HOM05D000186 ORTHO05D006806 2.0e-08 62.0 50 66.0
Potri.006G114300 Populus trichocarpa HOM05D000186 ORTHO05D006806 2.0e-08 62.0 49 73.5
Hund03682 Selenicereus undatus HOM05D000186 ORTHO05D006806 2.0e-08 62.0 41 80.5
Duzib151G0189 Durio zibethinus HOM05D000186 ORTHO05D006806 3.4e-08 61.2 36 86.1
Sabra06G0089200 Salix brachista HOM05D000186 ORTHO05D006806 4.5e-08 60.8 62 59.7
BcaB01g03668 Brassica carinata HOM05D000186 ORTHO05D006806 2.9e-07 58.2 46 65.2
Aa31LG5G23300 Aethionema arabicum HOM05D000186 ORTHO05D006806 3.8e-07 57.8 46 67.4
AL4G35930 Arabidopsis lyrata HOM05D000186 ORTHO05D006806 1.9e-06 55.5 46 65.2
AT2G38650 Arabidopsis thaliana HOM05D000186 ORTHO05D006806 1.9e-06 55.5 46 65.2
BcaC01g05520 Brassica carinata HOM05D000186 ORTHO05D006806 2.5e-06 55.1 46 63.0
A03p21490 Brassica napus HOM05D000186 ORTHO05D006806 2.5e-06 55.1 46 63.0
C03p25440 Brassica napus HOM05D000186 ORTHO05D006806 2.5e-06 55.1 46 63.0
BolC3t14935H Brassica oleracea HOM05D000186 ORTHO05D006806 2.5e-06 55.1 46 63.0
A05p07450 Brassica napus HOM05D000186 ORTHO05D006806 3.2e-06 54.7 45 64.4
BraA05t19710Z Brassica rapa HOM05D000186 ORTHO05D006806 3.2e-06 54.7 45 64.4
Carub.0004s2063 Capsella rubella HOM05D000186 ORTHO05D006806 5.5e-06 53.9 33 81.8
Thhalv10016387m.g Eutrema salsugineum HOM05D000186 ORTHO05D006806 5.5e-06 53.9 33 81.8
Sp4g20990 Schrenkiella parvula HOM05D000186 ORTHO05D006806 5.5e-06 53.9 33 81.8
BcaC02g07455 Brassica carinata HOM05D000186 ORTHO05D006806 7.1e-06 53.5 51 58.8
CDE04G3282 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 7.1e-06 53.5 51 62.7
CDE06G2059 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 7.1e-06 53.5 51 62.7
BraA04t18415Z Brassica rapa HOM05D000186 ORTHO05D006806 9.3e-06 53.1 47 61.7
PGR031G2837 Punica granatum HOM05D000186 ORTHO05D006806 9.3e-06 53.1 63 54.0


User provided reference genes

Program Settings