Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.3e-249 865.9 430 100.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 8.0e-151 537.7 379 75.5
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 9.8e-141 504.2 386 69.4
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.2e-139 499.2 386 69.7
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.9e-136 490.0 407 65.4
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.5e-136 487.6 388 68.3
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.3e-134 483.0 389 67.6
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 5.2e-134 481.9 384 68.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.1e-131 474.2 389 65.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.9e-131 473.4 383 66.6
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 2.3e-129 466.5 383 65.3
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.5e-128 463.0 379 66.2
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 7.3e-128 461.5 391 64.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.2e-127 460.7 391 65.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.9e-126 454.5 379 65.2
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 8.9e-126 454.5 378 65.9
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.6e-125 453.0 378 65.9
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 4.4e-125 452.2 380 64.7
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 4.4e-125 452.2 387 64.6
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.3e-124 450.7 378 65.1
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 8.3e-124 448.0 375 62.7
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 8.3e-124 448.0 387 63.6
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.1e-123 447.6 376 64.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-123 447.2 390 63.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.6e-122 443.7 431 55.9
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.1e-122 443.4 388 62.6
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.1e-122 443.4 394 61.4
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 3.5e-122 442.6 385 60.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 3.9e-121 439.1 389 62.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.9e-121 439.1 383 61.9
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 8.6e-121 438.0 383 62.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-120 437.2 385 60.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.3e-120 435.6 392 61.0
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 5.6e-120 435.3 391 59.3
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 9.5e-120 434.5 379 63.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 9.5e-120 434.5 394 59.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.2e-119 434.1 385 60.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 6.2e-119 431.8 382 62.0
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 8.1e-119 431.4 387 60.2
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-118 430.6 385 59.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-118 430.6 385 59.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 3.1e-118 429.5 401 59.1
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 2.6e-117 426.4 389 59.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.4e-117 425.6 445 56.9
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.7e-116 423.7 382 61.3
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.9e-116 422.2 383 60.8
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 6.4e-116 421.8 371 62.3
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 6.4e-116 421.8 373 61.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.9e-115 420.2 384 60.2
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.6e-114 415.6 370 60.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 6.0e-114 415.2 397 57.4
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 6.0e-114 415.2 380 60.3
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 6.0e-114 415.2 381 60.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.3e-113 414.1 388 60.8
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.3e-113 414.1 377 61.5
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.7e-113 413.7 368 60.1
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.1e-112 411.0 389 58.4
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.3e-112 409.5 367 60.5
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.3e-112 409.5 386 59.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 3.3e-112 409.5 378 59.5
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.6e-112 407.9 380 58.2
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.8e-111 406.4 384 57.3
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.1e-110 404.4 386 57.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.8e-110 403.7 371 58.5
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 6.9e-110 401.7 392 55.9
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.0e-109 400.2 386 56.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.6e-109 399.8 381 56.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.7e-108 397.1 380 57.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.9e-108 396.4 384 57.3
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.8e-108 396.0 384 56.5
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.8e-108 396.0 383 55.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 8.4e-108 394.8 407 54.5
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 7.8e-106 388.3 369 57.5
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 3.9e-105 386.0 385 56.1
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 4.3e-104 382.5 384 55.2
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 5.6e-104 382.1 386 55.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 5.6e-104 382.1 385 55.8
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 9.6e-104 381.3 388 54.9
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.1e-103 380.2 388 55.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.6e-103 379.4 384 55.7
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-102 376.7 379 54.9
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.0e-102 375.9 396 54.3
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.3e-102 375.6 387 55.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.3e-102 375.6 402 52.7
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 9.0e-102 374.8 369 57.5
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.0e-101 373.6 387 55.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.2e-100 370.2 386 55.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 8.4e-100 368.2 387 54.8
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 2.4e-99 366.7 385 55.1
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 7.1e-99 365.2 375 55.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.6e-98 364.0 377 55.2
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.7e-98 363.2 290 64.8
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 5.1e-97 359.0 370 55.9
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.7e-97 358.2 387 54.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.5e-96 356.7 400 50.2
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.3e-96 356.3 401 49.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.7e-95 352.8 449 47.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.1e-91 341.3 311 60.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.1e-91 341.3 343 54.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.2e-91 339.7 370 53.8
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 9.3e-91 338.2 370 54.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.7e-90 336.7 370 53.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.0e-89 334.7 372 53.0
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.8e-89 334.0 390 49.5
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.1e-86 324.7 241 70.5
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-83 314.7 364 54.1
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.3e-81 307.0 385 48.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.3e-81 307.0 287 58.5
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.7e-80 302.4 281 56.9
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 4.8e-79 299.3 440 43.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.5e-77 292.7 406 43.3
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.0e-73 281.6 258 57.4
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.0e-73 281.6 349 48.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.8e-65 254.2 413 40.0
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.9e-65 253.1 210 64.8
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-64 251.1 392 42.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.6e-64 250.4 374 44.4
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.5e-60 235.3 381 39.9
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.7e-58 229.6 189 57.7
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.4e-57 228.0 356 41.0
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.0e-56 224.2 415 37.8
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 2.8e-55 220.3 292 45.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.8e-54 217.6 428 35.3
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.0e-52 209.5 271 41.3
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.7e-47 194.5 168 61.9
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-47 193.7 153 61.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.9e-44 183.7 173 54.3
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 8.5e-44 182.2 183 55.2
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-41 173.7 152 57.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.5e-37 160.2 114 66.7
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-28 132.1 175 49.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.8e-25 119.4 183 45.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.9e-20 103.6 248 33.9
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.9e-20 103.6 118 47.5
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 3.4e-16 90.5 74 55.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 7.5e-16 89.4 69 63.8
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 9.8e-16 89.0 128 42.2
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.7e-15 88.2 104 47.1
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.0e-13 79.7 61 67.2
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.0e-13 79.7 61 67.2
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.5e-11 75.1 51 70.6
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 9.5e-11 72.4 63 55.6
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.1e-10 71.2 102 46.1
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.1e-10 71.2 102 46.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.1e-09 67.4 149 41.6


User provided reference genes

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