Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 0.0e+00 1171.8 609 100.0
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 6.0e-168 595.1 644 53.9
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 3.9e-159 565.8 641 50.2
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.9e-158 563.5 615 53.2
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 3.1e-156 556.2 658 49.7
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 2.6e-155 553.1 647 50.7
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 7.6e-155 551.6 650 50.3
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 7.9e-152 541.6 620 52.7
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 3.3e-150 536.2 651 48.7
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 4.3e-150 535.8 616 49.2
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 5.6e-150 535.4 649 49.3
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 7.4e-150 535.0 640 47.5
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 8.1e-149 531.6 640 47.8
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 1.4e-148 530.8 668 49.0
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.8e-148 530.4 651 48.5
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 5.3e-148 528.9 648 49.2
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 1.5e-147 527.3 630 50.6
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 5.8e-147 525.4 649 49.6
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 1.3e-146 524.2 653 47.9
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 1.3e-146 524.2 663 48.6
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 3.8e-146 522.7 646 48.0
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 8.4e-146 521.5 656 49.7
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 4.2e-145 519.2 648 48.9
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.2e-144 517.7 636 48.9
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 7.9e-144 515.0 648 49.7
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 1.8e-140 503.8 636 47.8
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.1e-140 503.1 658 48.5
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 1.5e-139 500.7 642 47.2
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 7.6e-139 498.4 638 47.8
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.3e-138 497.7 627 46.4
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.3e-138 497.7 638 48.0
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.8e-138 496.1 667 46.5
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 8.4e-138 495.0 620 47.9
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 1.4e-137 494.2 635 47.4
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 3.2e-137 493.0 649 47.1
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 4.2e-137 492.7 660 47.6
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 4.2e-137 492.7 654 47.7
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 7.1e-137 491.9 638 47.2
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 9.3e-137 491.5 644 46.6
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 9.3e-137 491.5 638 47.5
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 1.6e-136 490.7 651 48.7
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 2.7e-136 490.0 695 44.5
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 7.9e-136 488.4 639 48.0
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 1.5e-134 484.2 637 47.4
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 3.3e-134 483.0 638 47.3
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 4.8e-133 479.2 637 45.7
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 4.8e-133 479.2 637 45.7
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 4.8e-133 479.2 636 46.4
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 4.8e-133 479.2 635 46.8
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 1.1e-132 478.0 657 45.4
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 1.1e-132 478.0 644 48.0
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 1.8e-132 477.2 656 46.5
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 4.5e-131 472.6 556 50.9
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 5.9e-131 472.2 656 45.9
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 6.5e-130 468.8 625 46.2
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 4.6e-128 462.6 632 44.6
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 4.6e-128 462.6 621 45.4
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 1.8e-127 460.7 638 45.8
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 2.3e-127 460.3 534 51.7
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 2.2e-125 453.8 621 44.9
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 8.2e-125 451.8 585 48.5
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.2e-123 448.0 703 43.8
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 1.3e-122 444.5 653 43.2
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 8.5e-122 441.8 499 52.9
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 8.5e-122 441.8 637 44.1
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 1.1e-121 441.4 640 44.4
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 2.3e-119 433.7 615 43.9
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 3.9e-119 433.0 580 45.9
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 7.4e-118 428.7 651 43.6
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 9.7e-118 428.3 614 43.5
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 2.8e-117 426.8 627 43.4
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 2.8e-117 426.8 621 44.8
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 9.1e-116 421.8 463 52.5
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 9.1e-116 421.8 643 42.3
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 2.2e-114 417.2 632 41.5
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 2.1e-112 410.6 629 40.2
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 4.7e-112 409.5 535 48.6
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 4.7e-112 409.5 639 40.8
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 5.2e-111 406.0 635 40.5
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 1.5e-110 404.4 658 39.2
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 4.4e-110 402.9 645 40.6
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 5.7e-110 402.5 639 40.2
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 5.7e-110 402.5 658 39.8
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 2.4e-108 397.1 632 40.2
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 5.9e-107 392.5 635 40.0
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 5.9e-107 392.5 694 40.2
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 6.5e-106 389.0 629 39.4
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 9.4e-105 385.2 635 39.1
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 9.4e-105 385.2 635 38.4
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 2.7e-104 383.6 634 38.8
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 8.0e-104 382.1 349 60.5
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 2.3e-103 380.6 539 46.0
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 7.5e-102 375.6 628 38.4
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 1.2e-99 368.2 353 59.8
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 2.9e-98 363.6 651 37.6
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 2.1e-96 357.5 357 56.3
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 3.0e-95 353.6 580 41.2
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 6.3e-93 345.9 639 37.7
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 4.7e-88 329.7 606 39.4
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 3.1e-84 317.0 622 36.5
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 7.0e-84 315.8 628 36.9
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 3.6e-80 303.5 636 36.0
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 1.6e-75 288.1 389 45.8
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 9.2e-68 262.3 228 58.8
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 6.6e-66 256.1 579 32.5
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 6.6e-66 256.1 207 64.3
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 3.3e-65 253.8 458 37.3
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 8.4e-53 212.6 417 36.2
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 3.9e-50 203.8 277 45.8
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.9e-47 193.0 168 55.4
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 6.0e-43 179.9 144 61.8
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 1.0e-42 179.1 687 25.5
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 2.5e-41 174.5 382 35.6
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 9.6e-41 172.6 424 35.1
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.6e-40 170.6 265 44.5
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 1.5e-38 165.2 322 32.3
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 4.5e-38 163.7 246 38.2
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 5.8e-38 163.3 391 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 4.9e-37 160.2 460 28.9
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 3.5e-35 154.1 229 44.1
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 7.9e-35 152.9 592 23.8
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 3.0e-34 151.0 171 48.5
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 8.7e-34 149.4 134 56.0
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 2.4e-31 141.4 111 61.3
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 4.2e-28 130.6 88 70.5
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 6.7e-26 123.2 161 39.8
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 4.8e-24 117.1 182 41.2
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 1.4e-23 115.5 166 46.4
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 9.0e-23 112.8 322 32.6
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.2e-21 108.2 85 58.8
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.9e-17 95.1 199 34.2
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 3.3e-17 94.4 150 40.7
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 5.7e-17 93.6 228 24.6
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.6e-16 92.0 77 55.8
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.1e-15 87.8 75 52.0
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.5e-12 78.2 364 27.2
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 4.6e-11 73.9 108 41.7
CBR_g41105 Chara braunii HOM05D001740 ORTHO05D001468 7.4e-09 66.6 151 27.8
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 8.2e-08 63.2 77 42.9
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 1.4e-07 62.4 59 52.5
Cpa.g.sc189.1 Carica papaya HOM05D005152 ORTHO05D006162 2.6e-06 58.2 57 47.4


User provided reference genes

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