Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 6.5e-51 203.8 102 100.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.6e-44 181.8 91 100.0
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.1e-21 106.7 66 83.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 4.1e-21 104.8 66 81.8
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 5.4e-21 104.4 66 81.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.7e-20 102.1 66 77.3
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 3.5e-20 101.7 66 80.3
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 5.9e-20 100.9 66 80.3
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 7.8e-20 100.5 67 80.6
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.9e-19 98.6 62 77.4
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 3.8e-19 98.2 66 78.8
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 6.6e-19 97.4 66 75.8
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.5e-18 96.3 66 74.2
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.5e-18 96.3 66 71.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.5e-18 96.3 66 71.2
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.3e-18 95.1 60 81.7
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 4.3e-18 94.7 66 75.8
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 5.6e-18 94.4 50 92.0
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 7.3e-18 94.0 64 76.6
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 9.5e-18 93.6 68 73.5
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 9.5e-18 93.6 59 78.0
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.2e-17 93.2 66 69.7
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-17 93.2 57 77.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.2e-17 93.2 64 75.0
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.6e-17 92.8 72 65.3
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.6e-17 92.8 67 71.6
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.1e-17 92.4 67 71.6
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.1e-17 92.4 59 76.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.1e-17 92.4 66 77.3
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.1e-17 92.4 68 72.1
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.1e-17 92.4 63 74.6
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.8e-17 92.0 57 77.2
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.8e-17 92.0 75 64.0
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.8e-17 92.0 51 84.3
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.8e-17 92.0 53 81.1
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 3.6e-17 91.7 62 75.8
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 3.6e-17 91.7 67 71.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 4.7e-17 91.3 66 68.2
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 4.7e-17 91.3 60 76.7
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.7e-17 91.3 80 62.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.0e-16 90.1 60 76.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.0e-16 90.1 67 70.1
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.4e-16 89.7 66 71.2
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-16 89.7 50 84.0
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.4e-16 89.7 50 84.0
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 1.8e-16 89.4 63 68.3
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.8e-16 89.4 61 75.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 3.0e-16 88.6 49 87.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 3.0e-16 88.6 67 67.2
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 6.8e-16 87.4 51 80.4
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 6.8e-16 87.4 73 61.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.9e-16 87.0 66 66.7
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 8.9e-16 87.0 66 66.7
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.5e-15 86.3 53 73.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 1.5e-15 86.3 60 75.0
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.5e-15 86.3 50 80.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 2.0e-15 85.9 62 69.4
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.0e-15 85.9 76 57.9
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.0e-15 85.9 53 71.7
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.6e-15 85.5 56 73.2
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.6e-15 85.5 50 78.0
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 3.4e-15 85.1 61 72.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.4e-15 85.1 50 78.0
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 3.4e-15 85.1 63 68.3
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 3.4e-15 85.1 60 66.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.4e-15 85.1 50 84.0
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.4e-15 84.7 62 64.5
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.8e-15 84.3 60 70.0
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 7.5e-15 84.0 79 60.8
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 7.5e-15 84.0 63 68.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.5e-15 84.0 59 69.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.3e-14 83.2 50 78.0
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-14 83.2 58 69.0
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-14 83.2 52 75.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.3e-14 83.2 52 75.0
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.7e-14 82.8 73 58.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.7e-14 82.8 51 78.4
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-14 82.8 52 73.1
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-14 82.8 52 73.1
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-14 82.4 50 76.0
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.2e-14 82.4 50 76.0
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.9e-14 82.0 64 67.2
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.9e-14 82.0 75 57.3
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.9e-14 82.0 64 62.5
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.7e-14 81.6 62 71.0
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.7e-14 81.6 48 77.1
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 4.9e-14 81.3 52 73.1
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 4.9e-14 81.3 62 64.5
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.9e-14 81.3 62 64.5
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 4.9e-14 81.3 51 72.5
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.9e-14 81.3 46 84.8
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.9e-14 81.3 49 77.6
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 6.4e-14 80.9 47 78.7
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 6.4e-14 80.9 47 78.7
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 6.4e-14 80.9 47 78.7
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 6.4e-14 80.9 49 79.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-13 79.7 44 86.4
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 2.4e-13 79.0 50 74.0
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.4e-13 79.0 46 82.6
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 2.4e-13 79.0 50 74.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.1e-13 78.2 67 61.2
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 4.1e-13 78.2 66 63.6
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.4e-13 77.8 45 80.0
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 5.4e-13 77.8 45 80.0
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 5.4e-13 77.8 67 59.7
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 5.4e-13 77.8 67 59.7
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 5.4e-13 77.8 67 59.7
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 7.0e-13 77.4 69 56.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 9.2e-13 77.0 50 70.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 9.2e-13 77.0 50 70.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-12 76.6 46 80.4
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.0e-12 75.9 69 59.4
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.0e-12 75.9 67 62.7
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.7e-12 75.5 49 73.5
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 3.5e-12 75.1 49 73.5
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 6.0e-12 74.3 67 53.7
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.3e-11 73.2 48 75.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-10 69.7 50 72.0


User provided reference genes

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