Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.2e-88 328.9 170 100.0
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.2e-42 175.6 172 59.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.6e-41 171.8 172 56.4
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.0e-40 168.3 170 55.9
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.6e-39 164.9 175 54.9
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.9e-35 152.5 171 55.0
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.1e-34 148.7 172 54.1
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.1e-33 146.4 176 51.1
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.3e-32 142.9 172 52.9
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.0e-32 142.5 171 52.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.2e-30 137.1 173 52.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.6e-30 136.7 174 51.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.1e-30 136.3 176 49.4
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-29 134.0 174 51.1
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.8e-29 133.3 174 48.9
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.2e-29 131.7 174 47.1
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.0e-28 129.8 174 47.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.6e-28 129.4 169 51.5
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 9.9e-28 127.5 175 46.9
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 9.9e-28 127.5 173 49.1
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.2e-27 126.3 174 47.7
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.2e-27 126.3 174 47.7
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.9e-27 125.2 173 50.3
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.4e-27 124.8 174 47.1
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.9e-26 123.2 170 46.5
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.9e-26 123.2 171 50.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.4e-26 121.7 183 44.8
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 5.4e-26 121.7 120 56.7
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 9.2e-26 120.9 175 46.3
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.2e-25 120.6 171 43.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.6e-25 120.2 172 43.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.7e-25 119.4 172 44.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 6.0e-25 118.2 176 45.5
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.7e-24 116.7 171 45.0
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 3.9e-24 115.5 172 45.9
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 5.1e-24 115.2 170 44.7
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 6.6e-24 114.8 173 44.5
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-23 114.0 175 40.6
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.5e-23 113.6 165 49.1
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 3.3e-23 112.5 170 42.9
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 4.3e-23 112.1 171 42.7
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 7.3e-23 111.3 171 43.3
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 7.3e-23 111.3 171 44.4
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.6e-22 110.2 170 43.5
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 4.7e-22 108.6 169 39.1
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.2e-22 108.2 177 40.7
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 6.2e-22 108.2 171 43.3
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.8e-21 106.7 168 41.1
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.4e-21 106.3 170 39.4
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.4e-21 106.3 169 40.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.4e-21 106.3 174 44.3
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.1e-21 105.9 177 42.9
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.0e-21 105.5 178 42.7
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 5.2e-21 105.1 170 39.4
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.9e-21 104.4 141 46.8
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 1.2e-20 104.0 172 42.4
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.2e-20 104.0 169 38.5
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.3e-19 100.5 168 40.5
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.3e-19 100.5 168 39.3
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.7e-19 100.1 168 40.5
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.2e-19 99.8 169 39.1
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.9e-19 99.4 168 40.5
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 3.8e-19 99.0 172 41.9
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.4e-19 98.2 172 39.0
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.1e-18 97.4 172 41.9
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.9e-18 96.7 171 38.0
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.4e-18 96.3 172 40.1
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 3.2e-18 95.9 172 41.9
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 5.4e-18 95.1 171 38.0
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 9.3e-18 94.4 182 39.6
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.6e-17 93.6 172 38.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.6e-17 93.6 190 38.9
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.1e-17 93.2 180 40.6
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.5e-17 92.4 169 39.6
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 4.6e-17 92.0 179 39.7
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 6.0e-17 91.7 172 36.0
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 7.8e-17 91.3 172 36.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.3e-16 90.5 177 42.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.7e-16 90.1 169 42.6
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.7e-16 90.1 187 39.0
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.3e-16 89.7 173 42.8
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 3.0e-16 89.4 170 41.8
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 3.0e-16 89.4 170 40.6
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 3.9e-16 89.0 171 39.2
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 6.6e-16 88.2 173 41.0
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 2.5e-15 86.3 171 38.0
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 4.3e-15 85.5 166 37.3
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.3e-15 85.5 170 38.8
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 7.3e-15 84.7 177 37.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 9.6e-15 84.3 170 33.5
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.6e-14 83.6 180 37.8
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.1e-14 83.2 154 42.2
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.8e-14 82.0 175 38.9
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.2e-14 81.6 170 34.1
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.2e-14 81.6 170 34.1
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.1e-14 81.3 170 35.9
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.1e-13 80.9 175 41.1
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.1e-13 80.9 170 35.9
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.4e-13 80.5 171 36.3
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.4e-13 80.5 174 39.1
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.4e-13 80.5 174 39.1
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.8e-13 80.1 154 40.9
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.8e-13 80.1 170 35.9
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 3.1e-13 79.3 175 41.1
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 5.3e-13 78.6 174 38.5
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 5.3e-13 78.6 174 37.9
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.5e-12 77.0 167 36.5
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.5e-12 77.0 175 35.4
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 3.4e-12 75.9 177 40.1
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 4.5e-12 75.5 181 37.6
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.8e-12 75.1 178 33.1
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 5.8e-12 75.1 171 35.1
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 7.6e-12 74.7 173 38.2
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 9.9e-12 74.3 151 38.4
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 9.9e-12 74.3 172 34.9
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.7e-11 73.6 172 34.9
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.2e-11 73.2 166 34.3
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 4.9e-11 72.0 172 34.3
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.1e-10 70.9 180 36.7
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 4.2e-10 68.9 173 35.3
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 9.3e-10 67.8 175 32.6
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.6e-09 65.5 58 60.3
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 4.6e-09 65.5 196 31.6
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.3e-08 63.9 143 33.6
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.8e-08 63.5 172 32.6
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 1.8e-08 63.5 167 32.3
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 8.7e-08 61.2 168 33.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.5e-07 60.5 132 36.4
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 7.4e-07 58.2 170 30.6
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.3e-06 57.4 177 32.2
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.6e-06 57.0 172 30.8
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 4.8e-06 55.5 174 31.6
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 4.8e-06 55.5 188 30.3
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 4.8e-06 55.5 173 31.2
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 6.2e-06 55.1 149 33.6
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 8.1e-06 54.7 170 34.1


User provided reference genes

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