Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 3344.3 1805 100.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2221.0 1782 68.7
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2168.3 1781 67.4
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2140.9 1749 67.2
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2077.4 1774 64.1
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2076.2 1510 73.5
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2032.7 1803 61.9
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1983.8 1775 61.7
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1978.0 1750 61.4
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1974.9 1746 62.3
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1967.2 1715 62.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1965.3 1702 62.9
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1963.7 1763 61.0
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 1961.4 1652 64.7
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 1961.4 1639 64.6
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 1952.2 1768 60.7
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 1939.9 1659 63.8
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 1937.5 1761 60.0
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1933.7 1748 60.8
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 1923.7 1712 61.9
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 1916.7 2043 55.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1912.5 1801 59.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1911.7 1767 60.8
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1906.0 1796 59.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1903.6 1791 60.2
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1895.6 1760 59.7
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1895.2 1750 60.8
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1889.8 1602 63.3
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 1870.5 1754 59.2
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 1861.7 1680 60.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 1860.9 1729 59.5
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1855.9 1766 59.0
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 1843.9 1746 58.8
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1818.9 1754 58.4
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 1818.5 1749 58.2
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 1817.7 1723 58.4
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 1806.2 1781 56.5
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 1804.6 1766 56.5
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 1782.7 1703 57.7
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 1781.9 1680 58.4
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 1776.1 1743 56.7
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1773.4 1754 56.6
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 1770.7 1764 55.8
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 1770.0 1719 57.5
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1769.2 1737 57.4
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1766.1 1744 56.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 1761.1 1761 56.8
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 1758.0 1742 56.7
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 1756.9 1583 61.5
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1756.5 2228 48.6
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1743.4 1810 55.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1742.2 1247 73.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1741.5 1741 56.5
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1740.7 1691 57.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1728.8 1750 55.0
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1720.7 1787 55.5
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 1720.7 1743 55.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1711.8 1738 55.2
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1706.4 1752 55.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1701.8 1738 55.9
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1699.1 1759 55.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1698.7 1760 55.5
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1698.3 1719 55.6
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1698.3 1654 56.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1698.3 1654 56.5
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1696.8 1702 56.5
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1696.0 1757 55.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1692.9 1757 55.4
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1690.2 1677 56.6
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1685.6 1757 55.0
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1676.8 1763 54.8
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1672.9 1773 54.5
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1669.8 1763 54.4
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1620.1 1647 55.4
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1596.3 1734 53.7
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1531.9 1742 51.2
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1424.5 1068 71.0
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1345.5 1691 47.8
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1312.4 1754 46.1
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1234.2 1341 51.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1180.6 1649 44.8
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1174.8 1472 48.3
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1159.8 1606 44.2
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.1e-307 1060.8 1715 39.7
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 3.7e-298 1029.2 690 78.6
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 2.5e-294 1016.5 1081 54.7
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 5.5e-294 1015.4 1777 38.3
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 4.7e-285 985.7 887 62.1
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 6.3e-266 922.2 1349 44.0
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.6e-264 917.5 870 59.5
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 7.8e-256 888.6 1697 36.3
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.2e-245 854.7 1626 36.2
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.9e-242 842.8 967 49.8
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 4.7e-237 826.2 1042 46.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 2.7e-224 783.9 1729 33.4
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 5.8e-211 739.6 847 50.8
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 1.8e-207 728.0 1014 45.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.3e-194 685.3 658 58.4
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 3.2e-161 574.3 490 63.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 5.0e-138 497.3 1738 26.4
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.3e-113 414.5 263 79.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 4.0e-111 407.9 402 56.0
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 5.6e-105 387.5 766 34.5
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 3.0e-98 365.2 541 40.1
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.4e-79 303.1 271 60.1
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 5.9e-70 271.2 194 70.6
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 6.7e-66 257.7 811 28.5
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 3.1e-63 248.8 649 33.0
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-61 242.7 167 76.0
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.6e-59 236.5 363 45.2
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.2e-58 231.5 158 73.4
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-56 225.7 180 71.7
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-56 225.7 180 71.7
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.8e-56 225.7 187 69.0
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.8e-56 225.7 180 71.7
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-55 223.8 194 63.4
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 2.6e-54 219.2 843 27.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 2.2e-53 216.1 252 51.2
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-43 183.3 129 78.3
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 4.7e-43 181.8 248 49.2
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 6.8e-42 177.9 456 32.0
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.3e-40 171.4 196 49.5
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 7.2e-36 157.9 140 63.6
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.0e-34 152.5 332 37.0
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-29 136.7 116 68.1
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 3.0e-26 125.9 88 72.7
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.7e-24 120.2 692 22.8
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-23 117.5 69 89.9
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 5.4e-23 115.2 169 45.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 7.0e-23 114.8 96 64.6
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.7e-21 110.2 87 63.2
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 8.6e-21 107.8 77 72.7
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.7e-19 102.1 55 87.3
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 6.2e-19 101.7 75 72.0
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-18 99.8 151 43.0
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 4.0e-18 99.0 471 25.5
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.0e-17 96.7 61 72.1
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-15 90.9 57 86.0
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.9e-15 90.1 62 69.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.9e-15 90.1 100 59.0
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 5.4e-15 88.6 54 87.0
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.2e-14 87.4 70 68.6
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.9e-12 80.1 250 31.2
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.5e-12 79.7 59 62.7
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 8.9e-10 71.2 57 75.4
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.2e-09 70.9 69 53.6
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.4e-09 69.3 42 81.0
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.4e-09 68.9 39 84.6
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 2.2e-08 66.6 41 78.0
PGSC0003DMG400012673 Solanum tuberosum HOM05D003845 ORTHO05D004161 4.6e-06 58.9 115 40.0
arahy.Tifrunner.gnm1.ann1.5G22ZR Arachis hypogaea HOM05D021257 ORTHO05D004161 7.8e-06 58.2 70 48.6


User provided reference genes

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