Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 2.2e-111 407.1 574 100.0
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 3.5e-45 187.2 170 58.2
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 5.1e-44 183.3 172 55.2
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.3e-43 180.6 172 54.7
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.3e-43 180.6 172 54.7
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.4e-41 174.5 172 55.2
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.6e-40 171.0 170 50.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.4e-40 170.6 177 53.1
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 5.9e-40 169.9 173 52.6
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.9e-39 167.5 154 57.1
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 6.5e-39 166.4 172 51.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 8.5e-39 166.0 174 51.7
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.2e-38 164.1 172 51.7
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 3.2e-38 164.1 172 51.7
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 9.3e-38 162.5 171 53.2
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.1e-37 161.4 184 51.1
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 2.1e-37 161.4 170 51.8
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 3.0e-36 157.5 171 48.5
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 7.4e-35 152.9 174 47.1
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 8.2e-34 149.4 166 50.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.1e-33 147.1 175 45.7
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 5.3e-33 146.7 160 50.0
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.9e-33 146.4 173 50.3
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 9.1e-33 146.0 159 49.7
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.3e-31 142.1 165 46.1
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 5.0e-31 140.2 160 48.8
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 5.5e-30 136.7 175 47.4
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 9.4e-30 136.0 148 50.0
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.6e-29 134.0 170 45.3
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 6.1e-29 133.3 175 44.6
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.0e-28 132.5 96 60.4
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.0e-28 132.5 159 44.0
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 5.1e-28 130.2 182 41.8
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.5e-27 128.6 166 45.2
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.0e-27 128.3 155 45.2
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.6e-27 127.9 99 57.6
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 3.3e-27 127.5 173 43.4
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 4.4e-27 127.1 182 41.8
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 4.4e-27 127.1 145 49.7
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 7.4e-27 126.3 174 43.1
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.7e-26 125.2 104 55.8
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.7e-26 125.2 150 42.0
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 2.8e-26 124.4 141 44.7
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 4.8e-26 123.6 141 44.0
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 4.8e-26 123.6 147 43.5
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 8.2e-26 122.9 135 46.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 8.2e-26 122.9 138 51.4
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 3.1e-25 120.9 133 45.9
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 4.1e-25 120.6 170 43.5
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 4.5e-24 117.1 174 39.7
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 5.9e-24 116.7 141 42.6
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 5.9e-24 116.7 141 42.6
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 7.7e-24 116.3 99 53.5
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.0e-23 115.9 173 40.5
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.3e-23 115.5 139 46.0
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 3.8e-23 114.0 149 40.9
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 3.8e-23 114.0 137 48.2
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.9e-22 111.7 177 38.4
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.5e-22 111.3 176 40.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.2e-22 110.5 175 37.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.2e-22 110.5 175 37.7
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 4.2e-22 110.5 172 38.4
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 9.4e-22 109.4 175 37.7
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.2e-21 109.0 139 45.3
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.7e-21 107.8 139 44.6
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.7e-21 107.8 175 37.1
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 4.7e-21 107.1 194 34.5
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 6.1e-21 106.7 119 49.6
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.5e-19 102.1 141 44.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 5.7e-19 100.1 77 58.4
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 7.4e-19 99.8 103 49.5
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 7.4e-19 99.8 130 46.9
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.3e-18 99.0 74 59.5
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.7e-18 98.6 174 40.2
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.2e-18 98.2 103 41.7
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.1e-17 95.9 136 40.4
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 3.1e-17 94.4 152 38.2
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.3e-15 89.0 69 58.0
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.9e-14 85.1 147 34.0
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 4.2e-14 84.0 152 35.5
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 7.2e-14 83.2 80 50.0
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 1.2e-13 82.4 118 41.5
Lj2C43T6 Lonicera japonica HOM05D017878 ORTHO05D018225 3.0e-12 77.8 90 72.2
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 4.0e-12 77.4 120 36.7
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.2e-11 75.9 84 46.4
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 3.3e-11 74.3 81 46.9
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 4.4e-11 73.9 81 45.7
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 2.2e-10 71.6 69 47.8
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 3.7e-10 70.9 83 44.6
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.8e-10 70.5 69 47.8
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 4.1e-09 67.4 116 35.3
BcaB04g21297 Brassica carinata HOM05D008810 ORTHO05D010971 1.2e-08 65.9 91 35.2
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 2.0e-08 65.1 91 36.3
Glyma.19G248500 Glycine max HOM05D007620 ORTHO05D009568 3.5e-08 64.3 102 38.2
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 4.5e-08 63.9 91 35.2
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.5e-08 63.9 83 41.0
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.5e-08 63.9 83 41.0
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 5.9e-08 63.5 45 60.0
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 7.7e-08 63.2 99 38.4
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.0e-07 62.8 42 64.3
AT3G07290 Arabidopsis thaliana HOM05D008810 ORTHO05D010971 1.3e-07 62.4 91 33.0
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 1.3e-07 62.4 97 30.9
Sp3g06240 Schrenkiella parvula HOM05D008810 ORTHO05D010971 1.3e-07 62.4 87 34.5
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 1.7e-07 62.0 91 33.0
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 1.7e-07 62.0 193 26.4
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 2.2e-07 61.6 91 31.9
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 2.2e-07 61.6 42 64.3
TWI39G0225 Tripterygium wilfordii HOM05D007390 ORTHO05D009114 2.2e-07 61.6 91 37.4
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 3.8e-07 60.8 42 59.5
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 3.8e-07 60.8 97 29.9
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 5.0e-07 60.5 95 33.7
BolC1t05560H Brassica oleracea HOM05D008810 ORTHO05D010971 6.5e-07 60.1 80 36.2
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 1.1e-06 59.3 66 45.5
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 1.9e-06 58.5 108 30.6
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 1.9e-06 58.5 100 31.0
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.9e-06 58.5 91 31.9
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.9e-06 58.5 98 26.5
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 3.2e-06 57.8 92 33.7
Nn4g25162 Nelumbo nucifera HOM05D000162 ORTHO05D010307 3.2e-06 57.8 169 23.1
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.2e-06 57.8 124 33.1
CARHR081940 Cardamine hirsuta HOM05D008810 ORTHO05D010971 4.2e-06 57.4 87 33.3
Ciclev10018778m.g Citrus clementina HOM05D008810 ORTHO05D010971 4.2e-06 57.4 91 30.8
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 4.2e-06 57.4 99 31.3
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 4.2e-06 57.4 74 37.8
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 5.5e-06 57.0 92 31.5
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 9.4e-06 56.2 95 36.8


User provided reference genes

Program Settings