Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 3.8e-95 353.2 171 100.0
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 1.8e-52 211.5 171 64.3
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 2.7e-48 197.6 171 57.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 4.6e-48 196.8 166 55.4
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.0e-47 195.7 171 56.7
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 2.3e-47 194.5 171 59.1
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.3e-46 190.7 174 58.6
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.3e-46 190.7 174 58.6
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 5.6e-46 189.9 174 58.0
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.1e-45 188.0 172 57.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.4e-44 185.3 166 60.2
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.3e-44 184.5 152 55.9
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 6.8e-44 183.0 152 54.6
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 6.8e-44 183.0 152 54.6
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.2e-43 182.2 175 52.6
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 4.9e-42 176.8 171 54.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-41 174.9 175 50.9
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.2e-41 174.1 172 55.2
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 2.7e-40 171.0 169 52.7
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 7.8e-40 169.5 149 56.4
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.3e-38 164.1 152 51.3
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 5.6e-38 163.3 182 48.4
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.4e-36 158.7 152 52.6
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 3.1e-36 157.5 172 45.3
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 3.1e-36 157.5 115 63.5
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 3.1e-36 157.5 167 49.1
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 3.1e-36 157.5 170 51.2
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 8.9e-36 156.0 153 52.3
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.2e-35 155.6 149 52.3
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.4e-35 154.1 171 51.5
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 4.4e-35 153.7 165 48.5
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.4e-35 153.7 96 67.7
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 7.5e-35 152.9 171 46.8
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.3e-34 152.1 161 51.6
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 2.2e-34 151.4 171 43.9
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 4.9e-34 150.2 111 63.1
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 6.4e-34 149.8 124 58.9
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 2.4e-33 147.9 127 52.8
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 2.4e-33 147.9 133 51.9
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.2e-32 145.6 153 50.3
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.1e-32 144.8 145 49.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 7.8e-32 142.9 180 42.8
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.0e-31 142.5 94 66.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.0e-31 142.5 102 57.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.7e-31 141.7 171 46.2
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.7e-31 141.7 180 41.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 6.6e-31 139.8 177 44.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.6e-31 139.4 175 44.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.6e-31 139.4 175 44.0
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 1.1e-30 139.0 175 44.0
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.9e-30 138.3 178 40.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.3e-30 136.3 175 43.4
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.6e-29 134.0 151 43.0
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.6e-29 134.0 151 43.0
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.6e-29 134.0 113 60.2
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 6.2e-29 133.3 152 44.7
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 8.1e-29 132.9 152 44.1
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.1e-28 131.0 171 43.3
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 7.6e-27 126.3 169 42.0
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.3e-26 125.6 149 43.0
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 2.2e-26 124.8 178 39.9
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 7.1e-25 119.8 125 49.6
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.6e-24 118.6 174 41.4
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.1e-24 118.2 168 39.3
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.7e-24 117.9 148 44.6
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 3.5e-24 117.5 134 38.8
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 4.6e-24 117.1 96 59.4
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 4.6e-24 117.1 147 42.2
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 7.8e-24 116.3 169 42.6
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 7.8e-24 116.3 75 68.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.3e-23 115.5 117 52.1
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.7e-23 115.2 76 67.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.9e-22 111.7 152 42.8
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 4.3e-22 110.5 133 45.9
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.2e-21 109.0 137 40.1
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 6.2e-21 106.7 74 64.9
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 6.2e-21 106.7 81 60.5
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 2.4e-20 104.8 135 40.0
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 4.4e-19 100.5 154 36.4
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 4.4e-19 100.5 138 40.6
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 7.6e-19 99.8 138 40.6
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 4.9e-18 97.1 103 42.7
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 4.2e-17 94.0 141 34.8
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 7.1e-17 93.2 70 57.1
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.2e-16 92.4 158 34.2
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.1e-16 91.7 116 42.2
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 3.5e-16 90.9 67 58.2
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 4.6e-16 90.5 103 41.7
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 3.9e-15 87.4 103 39.8
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 3.9e-15 87.4 72 58.3
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 3.3e-14 84.3 175 31.4
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 4.0e-12 77.4 76 48.7
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 6.9e-12 76.6 94 44.7
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 6.9e-12 76.6 94 44.7
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 4.4e-11 73.9 91 42.9
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 6.4e-10 70.1 43 69.8
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.1e-09 69.3 128 37.5
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 1.1e-09 69.3 43 67.4
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 4.2e-09 67.4 43 67.4
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.2e-08 65.9 85 43.5
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 6.0e-08 63.5 44 56.8
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 3.9e-07 60.8 129 31.0
RcHm_v2.0_Chr7g0226411 Rosa chinensis HOM05D009519 ORTHO05D010307 6.6e-07 60.1 84 35.7
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.5e-06 58.9 129 30.2
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 1.9e-06 58.5 96 33.3
Lj2C43T6 Lonicera japonica HOM05D017878 ORTHO05D018225 1.9e-06 58.5 40 65.0
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.3e-06 57.8 130 32.3
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 3.3e-06 57.8 75 46.7
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.3e-06 57.4 50 54.0
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 4.3e-06 57.4 110 28.2
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 7.4e-06 56.6 95 32.6
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 9.6e-06 56.2 95 29.5
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 9.6e-06 56.2 110 27.3
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 9.6e-06 56.2 97 32.0


User provided reference genes

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