Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 1.6e-49 199.1 101 100.0
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.5e-39 166.0 96 86.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 5.7e-39 164.1 97 84.5
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 9.6e-39 163.3 97 85.6
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.6e-38 162.5 96 85.4
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 2.1e-38 162.2 96 85.4
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.1e-38 162.2 97 84.5
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.8e-38 161.8 96 83.3
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 2.8e-38 161.8 96 85.4
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.8e-38 161.8 97 84.5
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 6.3e-38 160.6 97 85.6
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 6.3e-38 160.6 97 81.4
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 6.3e-38 160.6 96 85.4
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.1e-37 159.8 97 83.5
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.1e-37 159.8 96 83.3
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.4e-37 159.5 97 82.5
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 2.4e-37 158.7 98 80.6
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 2.4e-37 158.7 95 84.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.1e-37 158.3 97 83.5
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 3.1e-37 158.3 93 82.8
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 3.1e-37 158.3 96 82.3
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 5.3e-37 157.5 98 81.6
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.3e-37 157.5 96 83.3
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.3e-37 157.5 96 83.3
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 5.3e-37 157.5 96 83.3
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 9.0e-37 156.8 98 79.6
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 1.2e-36 156.4 96 81.2
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.2e-36 156.4 97 80.4
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.2e-36 156.4 97 79.4
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 2.0e-36 155.6 97 78.4
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.0e-36 155.6 95 82.1
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 2.6e-36 155.2 97 78.4
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 2.6e-36 155.2 97 78.4
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 3.4e-36 154.8 97 82.5
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 4.5e-36 154.5 96 81.2
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 4.5e-36 154.5 96 80.2
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 5.9e-36 154.1 96 81.2
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 7.6e-36 153.7 96 79.2
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 7.6e-36 153.7 96 79.2
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.0e-35 153.3 96 81.2
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.3e-35 152.9 96 79.2
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.3e-35 152.9 96 79.2
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.7e-35 152.5 96 79.2
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.7e-35 152.5 96 79.2
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.7e-35 152.5 96 80.2
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.2e-35 152.1 96 80.2
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.2e-35 152.1 97 81.4
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.2e-35 152.1 97 81.4
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 2.9e-35 151.8 96 80.2
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.8e-35 151.4 94 83.0
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.8e-35 151.4 96 79.2
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 5.0e-35 151.0 96 78.1
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 5.0e-35 151.0 96 78.1
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 5.0e-35 151.0 99 79.8
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.0e-35 151.0 99 79.8
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.0e-35 151.0 99 79.8
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.5e-35 150.6 97 79.4
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.5e-35 150.6 97 79.4
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 6.5e-35 150.6 100 76.0
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 8.4e-35 150.2 97 80.4
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.1e-34 149.8 97 80.4
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 1.1e-34 149.8 93 81.7
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.4e-34 149.4 96 80.2
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 1.9e-34 149.1 95 80.0
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 1.9e-34 149.1 81 88.9
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 1.9e-34 149.1 95 82.1
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.5e-34 148.7 97 78.4
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 4.2e-34 147.9 97 77.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 5.5e-34 147.5 93 79.6
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 5.5e-34 147.5 96 77.1
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.2e-33 146.4 86 83.7
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.2e-33 146.4 93 78.5
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 1.6e-33 146.0 97 75.3
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.6e-33 146.0 96 75.0
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 1.6e-33 146.0 96 75.0
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 2.1e-33 145.6 96 76.0
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.7e-33 145.2 94 79.8
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 2.7e-33 145.2 81 84.0
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.7e-33 145.2 99 72.7
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 2.7e-33 145.2 93 77.4
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 3.5e-33 144.8 96 74.0
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 3.5e-33 144.8 97 78.4
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 3.5e-33 144.8 97 78.4
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.1e-33 144.1 97 78.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 6.1e-33 144.1 80 88.8
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 7.9e-33 143.7 96 74.0
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.3e-32 142.9 81 85.2
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.3e-32 142.9 93 74.2
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.3e-32 142.9 80 87.5
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.8e-32 142.5 96 77.1
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 1.8e-32 142.5 93 78.5
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.8e-32 142.5 96 72.9
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.8e-32 142.5 96 72.9
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.8e-32 142.5 81 87.7
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 2.3e-32 142.1 96 77.1
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 2.3e-32 142.1 80 85.0
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 3.0e-32 141.7 93 78.5
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.9e-32 141.4 96 77.1
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.9e-32 141.4 96 77.1
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 3.9e-32 141.4 93 79.6
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 5.1e-32 141.0 93 75.3
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 5.1e-32 141.0 93 75.3
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 5.1e-32 141.0 77 89.6
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.5e-31 138.7 94 74.5
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 2.5e-31 138.7 79 87.3
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 4.3e-31 137.9 101 72.3
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 4.3e-31 137.9 97 75.3
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 5.7e-31 137.5 93 78.5
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 5.7e-31 137.5 96 77.1
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 1.3e-30 136.3 84 79.8
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.3e-30 136.3 96 74.0
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 1.6e-30 136.0 86 79.1
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.2e-30 135.6 96 76.0
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.2e-30 135.6 93 77.4
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.8e-30 134.4 83 85.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 6.3e-30 134.0 101 71.3
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.2e-28 129.8 77 87.0
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.5e-28 129.4 93 71.0
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.5e-28 129.4 93 71.0
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 2.0e-28 129.0 93 69.9
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 5.9e-28 127.5 71 87.3
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.2e-27 125.6 93 68.8
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 2.5e-26 122.1 93 71.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.5e-26 120.9 90 74.4
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 9.4e-26 120.2 94 67.0
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.7e-25 118.6 81 70.4
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 4.6e-25 117.9 77 76.6
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 6.7e-24 114.0 87 72.4
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.1e-23 113.2 88 65.9
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.1e-23 113.2 71 77.5
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 4.3e-23 111.3 79 73.4
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.7e-23 110.9 60 91.7
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.3e-22 109.8 69 81.2
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 1.3e-22 109.8 94 63.8
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.3e-22 109.8 69 76.8
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 2.2e-22 109.0 75 68.0
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 4.8e-22 107.8 77 70.1
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 8.2e-22 107.1 78 70.5
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 6.9e-21 104.0 80 67.5
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 5.9e-20 100.9 60 80.0
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 2.9e-19 98.6 65 73.8
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.0e-19 97.8 96 54.2
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 6.5e-19 97.4 96 54.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 8.5e-19 97.1 65 72.3
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 4.2e-18 94.7 82 59.8
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 5.5e-18 94.4 99 52.5
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.2e-17 93.2 67 67.2
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 4.7e-17 91.3 57 70.2
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 6.1e-17 90.9 60 66.7
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 8.8e-16 87.0 49 87.8
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.3e-15 85.1 86 52.3
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 9.7e-15 83.6 62 69.4
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.4e-13 79.7 68 55.9
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 7.7e-12 73.9 47 76.6
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 8.5e-11 70.5 42 78.6
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 5.5e-10 67.8 34 94.1
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.7e-09 65.5 34 91.2
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 6.7e-08 60.8 93 39.8
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.7e-07 57.8 28 92.9
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 6.3e-06 54.3 55 54.5


User provided reference genes

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