Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 3.6e-163 578.2 288 100.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 7.1e-87 324.7 236 69.5
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.6e-86 323.6 232 71.1
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.6e-86 323.6 230 71.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 6.0e-86 321.6 227 71.8
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.0e-85 320.9 234 69.7
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 6.7e-85 318.2 232 70.3
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.5e-84 317.0 236 69.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 3.3e-84 315.8 227 69.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 5.7e-84 315.1 229 69.9
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.3e-83 313.9 336 55.4
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 6.3e-83 311.6 229 69.4
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.8e-82 310.1 227 67.8
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.4e-82 309.7 230 69.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.4e-82 309.7 235 68.1
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.1e-82 309.3 230 67.0
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.1e-82 309.3 230 68.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.1e-82 309.3 227 68.3
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.1e-82 309.3 227 69.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.3e-82 308.5 227 67.4
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.0e-81 306.6 227 67.4
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.0e-81 306.6 230 67.4
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.0e-81 306.6 234 65.4
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.0e-81 306.6 230 68.7
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.6e-81 306.2 227 67.8
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 4.5e-81 305.4 227 66.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.5e-81 305.4 227 67.4
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 5.9e-81 305.1 229 68.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 5.9e-81 305.1 229 67.2
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 5.9e-81 305.1 229 67.2
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.9e-81 305.1 227 67.8
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.0e-80 304.3 229 69.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.0e-80 304.3 229 69.4
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.0e-80 304.3 231 65.8
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-80 303.9 227 67.0
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.3e-80 303.9 228 68.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 2.2e-80 303.1 229 68.1
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.2e-80 303.1 232 66.4
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.9e-80 302.8 232 68.1
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.9e-80 302.8 227 68.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 3.8e-80 302.4 229 65.9
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 5.0e-80 302.0 227 66.1
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.0e-80 302.0 230 67.8
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.0e-80 302.0 230 67.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 5.0e-80 302.0 227 64.3
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.5e-80 301.6 230 67.4
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 8.5e-80 301.2 227 66.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.1e-79 300.8 227 67.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.1e-79 300.8 230 66.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.1e-79 300.8 230 64.8
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.4e-79 300.4 229 66.8
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-79 300.4 227 66.1
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-79 300.4 227 66.1
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.9e-79 300.1 227 66.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.9e-79 300.1 229 66.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.5e-79 299.7 229 66.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.2e-79 299.3 229 66.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 3.2e-79 299.3 233 64.4
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.2e-79 299.3 227 65.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 3.2e-79 299.3 229 65.5
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.2e-79 298.9 229 66.4
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 5.5e-79 298.5 229 65.1
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.2e-79 298.1 229 66.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 7.2e-79 298.1 227 66.1
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 9.3e-79 297.7 227 66.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 9.3e-79 297.7 227 66.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 9.3e-79 297.7 227 64.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.2e-78 297.4 227 65.6
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-78 297.4 227 64.8
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.6e-78 297.0 227 66.1
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.6e-78 297.0 227 65.6
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.6e-78 297.0 227 65.2
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 1.6e-78 297.0 228 65.8
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.1e-78 296.6 227 65.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 2.1e-78 296.6 227 65.6
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.7e-78 296.2 227 66.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.6e-78 295.4 227 65.6
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 6.1e-78 295.0 228 66.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 6.1e-78 295.0 227 65.6
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.1e-78 295.0 229 66.4
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 7.9e-78 294.7 227 65.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.0e-77 294.3 230 63.9
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.8e-77 293.5 229 63.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.3e-77 293.1 227 64.3
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-77 292.7 227 65.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 5.1e-77 292.0 229 65.5
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.9e-76 290.0 230 62.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.5e-76 289.7 230 63.0
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 3.3e-76 289.3 231 61.0
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 5.7e-76 288.5 229 63.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 9.7e-76 287.7 227 63.9
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 9.7e-76 287.7 237 59.5
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.3e-75 287.3 229 62.9
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.3e-75 287.3 230 63.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.3e-75 287.3 230 62.2
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.8e-75 286.2 229 64.6
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 6.3e-75 285.0 229 63.3
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-74 284.3 228 61.0
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-74 283.9 237 59.5
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-74 283.9 237 59.5
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.8e-74 283.5 229 62.9
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.4e-74 283.1 227 63.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.3e-74 282.0 232 61.2
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-73 280.4 229 61.1
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.0e-72 277.7 229 62.9
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.7e-72 276.9 225 61.8
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.2e-72 276.6 227 62.1
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 8.5e-72 274.6 310 50.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.1e-71 274.2 227 61.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 3.6e-70 269.2 227 59.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 4.6e-70 268.9 227 59.9
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.1e-70 268.5 217 62.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.0e-69 267.7 228 58.8
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.3e-69 266.5 232 59.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 6.7e-69 265.0 255 55.7
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 5.7e-68 261.9 340 45.9
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 7.4e-68 261.5 227 60.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 7.4e-68 261.5 227 59.0
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.1e-66 255.8 229 54.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 5.3e-66 255.4 227 56.4
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 6.9e-66 255.0 230 57.4
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 7.9e-62 241.5 192 65.6
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.6e-60 236.5 160 73.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.6e-60 236.5 234 54.3
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 7.4e-60 235.0 197 64.0
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.4e-58 229.9 163 70.6
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.1e-54 216.9 161 68.9
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.4e-52 209.1 161 66.5
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.9e-47 193.7 149 67.1
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.0e-45 186.4 183 54.6
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.3e-43 181.0 131 71.8
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 4.8e-43 179.1 96 88.5
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 6.3e-43 178.7 156 59.6
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 9.1e-42 174.9 210 49.0
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 8.5e-40 168.3 98 79.6
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.9e-39 167.2 103 77.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.9e-39 167.2 103 77.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.5e-36 157.5 227 41.0
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-36 157.5 95 77.9
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-36 156.8 112 67.0
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.3e-35 154.5 112 67.0
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.9e-31 140.6 116 61.2
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.3e-29 133.7 112 58.0
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.3e-29 133.7 94 69.1
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.5e-28 131.0 205 35.6
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-25 121.3 113 51.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.0e-24 118.2 101 55.4
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 7.5e-20 102.1 117 51.3
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 7.5e-20 102.1 120 48.3
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 8.1e-14 82.0 56 69.6
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.7e-11 74.3 49 69.4
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.2e-10 70.1 76 47.4
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 1.1e-07 61.6 41 68.3


User provided reference genes

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