Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 7.8e-139 498.4 624 100.0
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 6.8e-58 229.6 711 69.1
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 2.0e-54 218.0 707 70.2
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 5.6e-52 209.9 187 61.5
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 6.1e-51 206.5 650 73.7
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 6.1e-51 206.5 650 73.7
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 3.0e-50 204.1 650 72.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 8.9e-50 202.6 139 73.4
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 9.2e-47 192.6 651 71.3
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 1.1e-44 185.7 651 70.5
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 3.6e-43 180.6 652 70.1
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 6.2e-43 179.9 652 71.6
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 1.0e-42 179.1 651 71.7
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 1.8e-42 178.3 187 53.5
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 1.8e-42 178.3 134 67.9
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 2.3e-42 177.9 126 68.3
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 3.1e-42 177.6 651 70.7
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 4.0e-42 177.2 134 67.2
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 5.2e-42 176.8 651 70.0
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 5.2e-42 176.8 651 70.0
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 6.8e-42 176.4 133 65.4
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 8.9e-42 176.0 140 65.7
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 8.9e-42 176.0 657 69.3
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.2e-41 175.6 140 64.3
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 1.2e-41 175.6 134 65.7
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 2.0e-41 174.9 651 70.4
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.7e-40 171.8 651 70.0
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 4.9e-40 170.2 651 70.0
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.4e-39 168.7 140 60.0
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 1.4e-39 168.7 194 50.5
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 4.1e-39 167.2 197 50.8
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 4.1e-39 167.2 647 64.1
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 5.4e-39 166.8 140 62.1
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 7.0e-39 166.4 707 66.5
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 7.0e-39 166.4 120 70.0
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 7.0e-39 166.4 649 69.2
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 9.2e-39 166.0 194 50.0
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.6e-38 165.2 650 70.6
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.0e-38 164.9 193 49.2
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.7e-38 164.5 654 69.1
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 2.7e-38 164.5 194 49.5
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 4.6e-38 163.7 137 60.6
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.6e-38 163.7 207 51.7
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 4.6e-38 163.7 139 57.6
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 6.0e-38 163.3 191 48.7
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 1.3e-37 162.2 137 62.0
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.3e-37 162.2 647 67.5
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 3.0e-37 161.0 190 52.1
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 3.9e-37 160.6 135 59.3
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 3.9e-37 160.6 139 58.3
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.0e-37 160.2 130 63.8
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 6.6e-37 159.8 135 57.8
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 8.6e-37 159.5 135 58.5
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 8.6e-37 159.5 135 58.5
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 1.1e-36 159.1 140 60.0
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.9e-36 158.3 137 58.4
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 3.3e-36 157.5 146 59.6
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 4.3e-36 157.1 134 58.2
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 4.3e-36 157.1 134 58.2
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 4.3e-36 157.1 134 58.2
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 5.6e-36 156.8 133 60.2
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.6e-36 156.8 130 63.1
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 5.6e-36 156.8 651 69.3
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 1.2e-35 155.6 186 50.0
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.2e-35 155.6 117 67.5
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 1.6e-35 155.2 161 52.8
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.8e-35 154.5 133 60.9
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 6.2e-35 153.3 133 56.4
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 1.1e-34 152.5 138 55.8
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 2.3e-34 151.4 138 57.2
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 3.1e-34 151.0 140 57.1
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 6.8e-34 149.8 133 56.4
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 2.0e-33 148.3 708 55.1
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 4.4e-33 147.1 124 59.7
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 5.8e-33 146.7 140 55.7
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 9.8e-33 146.0 135 55.6
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.7e-32 145.2 124 58.9
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 2.2e-32 144.8 115 67.0
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.9e-32 144.4 112 67.0
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 8.3e-32 142.9 132 58.3
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 1.1e-31 142.5 193 44.0
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 4.1e-31 140.6 118 60.2
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 7.1e-31 139.8 195 43.1
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 2.1e-30 138.3 120 63.3
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 4.6e-30 137.1 85 76.5
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.6e-30 137.1 105 67.6
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.0e-29 136.0 121 63.6
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 3.9e-29 134.0 138 52.9
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 1.5e-28 132.1 118 57.6
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 1.5e-28 132.1 145 47.6
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.2e-27 129.0 84 71.4
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 8.1e-27 126.3 141 47.5
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 1.1e-26 125.9 113 54.9
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 5.8e-25 120.2 173 45.1
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 5.8e-25 120.2 82 65.9
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 1.7e-24 118.6 96 61.5
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 8.4e-24 116.3 138 44.9
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.2e-23 114.4 86 68.6
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 4.6e-22 110.5 77 67.5
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.3e-21 108.2 105 54.3
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 6.6e-21 106.7 105 53.3
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.1e-20 105.9 131 44.3
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-20 105.9 86 64.0
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-15 89.4 60 68.3
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 1.9e-15 88.6 65 69.2
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 1.2e-14 85.9 58 72.4
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.5e-12 79.0 50 76.0
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 4.3e-12 77.4 85 49.4
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 4.3e-12 77.4 85 49.4
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 2.1e-11 75.1 85 41.2
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 4.8e-11 73.9 71 54.9
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 6.2e-11 73.6 136 33.1
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 6.2e-11 73.6 136 33.1
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 2.4e-10 71.6 121 38.0
CDE07G1407 Ceratophyllum demersum HOM05D000186 ORTHO05D006806 9.0e-10 69.7 39 84.6


User provided reference genes

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