Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 5.2e-190 667.5 333 100.0
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 3.8e-132 475.3 332 70.8
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 7.6e-125 451.1 327 69.1
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.7e-124 449.9 307 73.0
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.7e-124 449.9 336 66.4
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 9.3e-123 444.1 332 68.1
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 3.3e-120 435.6 336 66.1
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 4.3e-120 435.3 336 66.7
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 9.7e-120 434.1 333 65.2
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 1.3e-119 433.7 333 65.2
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 8.2e-119 431.0 333 64.6
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 5.3e-118 428.3 333 65.2
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 2.0e-117 426.4 333 64.0
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 4.5e-117 425.2 328 65.2
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.0e-116 424.1 316 68.4
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.2e-115 418.7 332 63.9
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 9.4e-115 417.5 316 66.5
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 4.6e-114 415.2 347 62.0
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 2.0e-112 409.8 308 67.2
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 4.3e-112 408.7 337 61.4
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 9.7e-112 407.5 339 61.7
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.7e-111 406.8 334 60.8
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 1.1e-110 404.1 339 61.1
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 1.8e-110 403.3 358 58.7
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 2.0e-109 399.8 335 61.8
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.6e-109 399.4 306 66.3
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 4.5e-109 398.7 333 61.6
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 7.7e-109 397.9 332 60.8
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 1.7e-108 396.7 332 61.7
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 6.5e-108 394.8 336 60.7
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 6.5e-108 394.8 337 59.1
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.1e-107 394.0 256 77.7
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 2.5e-107 392.9 334 62.0
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 2.5e-107 392.9 335 60.3
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 3.2e-107 392.5 335 60.3
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 2.7e-106 389.4 330 60.9
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.0e-105 387.5 338 58.6
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.4e-105 387.1 336 58.6
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 2.0e-104 383.3 331 60.7
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 9.7e-104 380.9 332 58.7
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.1e-102 377.5 347 57.3
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.8e-102 376.7 332 60.2
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 3.1e-102 375.9 378 53.7
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 4.1e-102 375.6 337 57.9
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 7.7e-101 371.3 344 57.0
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 7.7e-101 371.3 278 66.2
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 2.9e-100 369.4 339 57.8
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 1.9e-99 366.7 336 57.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 4.2e-99 365.5 338 58.6
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 5.5e-99 365.2 333 57.4
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 2.7e-98 362.8 340 55.6
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.7e-98 362.8 333 57.4
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 3.6e-98 362.5 338 56.8
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 8.0e-98 361.3 338 55.0
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.4e-97 360.5 333 56.8
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.3e-97 359.8 332 56.0
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.3e-97 359.8 289 65.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-96 357.5 340 55.0
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 3.3e-96 355.9 335 56.4
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.3e-95 354.0 335 55.8
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 4.8e-95 352.1 329 57.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 6.3e-95 351.7 338 55.0
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 8.2e-95 351.3 370 51.4
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 4.1e-94 349.0 338 53.3
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.2e-93 347.4 314 54.5
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 3.5e-93 345.9 331 53.8
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 7.7e-93 344.7 328 53.7
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 2.2e-92 343.2 339 54.3
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 5.5e-91 338.6 326 54.3
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.8e-89 333.6 365 49.3
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 3.0e-89 332.8 359 50.4
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 3.0e-89 332.8 357 50.4
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 2.6e-88 329.7 348 48.9
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 2.6e-88 329.7 356 49.4
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 2.6e-88 329.7 357 49.9
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 3.4e-88 329.3 339 52.2
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 7.5e-88 328.2 363 49.3
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 9.7e-88 327.8 361 48.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 3.7e-87 325.9 336 51.5
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 4.8e-87 325.5 331 51.4
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 8.3e-87 324.7 341 51.9
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 7.0e-86 321.6 356 50.8
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 9.1e-86 321.2 347 51.0
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.6e-85 320.5 317 52.1
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 1.3e-84 317.4 332 52.1
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 6.5e-84 315.1 356 53.9
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 8.5e-84 314.7 369 51.8
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.5e-83 313.9 332 51.5
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.5e-83 313.9 302 53.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.5e-83 313.2 346 50.6
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 3.2e-83 312.8 350 51.7
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 4.2e-83 312.4 302 52.6
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 5.5e-83 312.0 370 46.5
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.2e-82 310.8 302 52.3
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 1.2e-82 310.8 380 47.6
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.8e-81 307.0 331 49.8
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 3.0e-81 306.2 369 50.9
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.5e-80 303.9 347 48.7
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.3e-76 290.8 327 49.8
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 2.7e-69 266.5 266 54.5
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 2.8e-58 229.9 225 52.4
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 5.8e-56 222.2 204 54.9
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.2e-55 220.3 336 41.4
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.4e-54 217.6 184 60.3
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 4.1e-54 216.1 336 40.8
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 9.5e-51 204.9 320 39.4
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.3e-49 200.3 252 40.5
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 9.9e-48 194.9 339 37.8
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 3.3e-43 179.9 240 40.0
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 8.9e-41 171.8 214 45.8
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.9e-39 166.0 232 40.9
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.4e-38 164.5 224 41.5
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.4e-38 162.5 224 41.1
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.5e-37 159.8 236 37.7
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 3.9e-36 156.4 210 43.3
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.1e-36 156.0 228 38.2
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.3e-34 151.4 210 41.0
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.1e-34 150.6 222 36.9
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.8e-34 149.4 230 40.0
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 7.9e-29 132.1 357 31.4
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 3.9e-28 129.8 114 57.0
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 5.3e-25 119.4 112 57.1
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 2.6e-24 117.1 114 54.4
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 4.2e-22 109.8 170 37.6
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 2.1e-21 107.5 125 48.0
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.8e-17 94.4 96 51.0


User provided reference genes

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