Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 2.3e-63 245.4 121 100.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 7.2e-57 223.8 129 86.8
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 7.2e-57 223.8 129 86.8
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 1.2e-56 223.0 131 86.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.0e-56 220.3 131 84.0
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 8.0e-56 220.3 131 84.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.4e-55 219.5 129 84.5
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.4e-55 219.5 129 84.5
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.0e-55 218.4 131 82.4
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 3.0e-55 218.4 129 84.5
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 4.0e-55 218.0 131 83.2
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 4.0e-55 218.0 131 82.4
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 4.0e-55 218.0 129 84.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 5.2e-55 217.6 131 80.9
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 5.2e-55 217.6 129 85.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 6.7e-55 217.2 129 82.9
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 8.8e-55 216.9 131 82.4
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.2e-54 216.5 129 83.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.2e-54 216.5 129 83.7
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.5e-54 216.1 129 82.9
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 2.6e-54 215.3 129 84.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.6e-54 215.3 129 82.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.6e-54 215.3 129 84.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 2.6e-54 215.3 131 83.2
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 3.3e-54 214.9 129 84.5
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.3e-54 214.9 129 82.2
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.3e-54 214.9 132 81.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.3e-54 214.9 129 83.7
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.4e-54 214.5 131 81.7
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.4e-54 214.5 131 81.7
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 4.4e-54 214.5 129 83.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 5.7e-54 214.2 131 80.9
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 5.7e-54 214.2 129 82.2
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 7.5e-54 213.8 131 80.9
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 7.5e-54 213.8 129 82.2
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 9.7e-54 213.4 129 82.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 9.7e-54 213.4 129 83.7
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 81.7
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 81.7
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 81.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 9.7e-54 213.4 129 82.2
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 9.7e-54 213.4 129 82.9
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 9.7e-54 213.4 129 81.4
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 80.9
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 81.7
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 9.7e-54 213.4 131 80.9
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.3e-53 213.0 131 80.9
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 82.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 82.9
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 81.4
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 82.9
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 82.9
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.7e-53 212.6 129 82.9
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.7e-53 212.6 131 80.9
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.2e-53 212.2 129 81.4
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 2.2e-53 212.2 129 82.2
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.2e-53 212.2 129 81.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.2e-53 212.2 129 81.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 81.4
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 81.4
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 81.4
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 81.4
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 80.6
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.8e-53 211.8 129 81.4
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.7e-53 211.5 129 81.4
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.7e-53 211.5 131 81.7
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.7e-53 211.5 131 81.7
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 80.6
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 82.2
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 81.4
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 82.9
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 82.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 4.8e-53 211.1 129 81.4
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.8e-53 211.1 131 79.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 6.3e-53 210.7 129 80.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 8.2e-53 210.3 129 80.6
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 8.2e-53 210.3 129 81.4
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-52 209.9 129 79.8
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-52 209.9 129 79.8
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.1e-52 209.9 129 80.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.4e-52 209.5 129 82.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.8e-52 209.1 129 80.6
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.8e-52 209.1 129 81.4
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.3e-52 207.6 129 81.4
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 9.1e-52 206.8 129 79.8
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.6e-51 206.1 129 78.3
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.6e-51 206.1 129 79.1
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 1.6e-51 206.1 129 77.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.0e-51 205.7 129 78.3
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.0e-51 205.7 129 79.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.7e-51 205.3 131 79.4
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.7e-51 205.3 129 79.8
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 2.7e-51 205.3 129 79.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.7e-51 205.3 129 79.8
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 3.5e-51 204.9 129 79.8
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 3.5e-51 204.9 129 79.8
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 4.5e-51 204.5 129 77.5
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 4.5e-51 204.5 129 79.8
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 5.9e-51 204.1 129 77.5
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 7.7e-51 203.8 131 78.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-50 203.4 129 76.7
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.0e-50 203.4 153 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.7e-50 202.6 129 76.0
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.7e-50 202.6 131 77.1
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.7e-50 202.6 129 76.7
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.7e-50 202.6 131 75.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.2e-50 202.2 130 79.2
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.2e-50 202.2 129 76.7
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 2.2e-50 202.2 129 79.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.9e-50 201.8 129 76.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.9e-50 201.8 129 76.0
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.9e-50 201.8 129 76.0
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 3.8e-50 201.4 131 77.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.8e-50 201.4 131 77.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 3.8e-50 201.4 129 78.3
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 3.8e-50 201.4 146 71.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 8.5e-50 200.3 129 76.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.2e-49 198.4 131 77.1
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.5e-49 197.6 129 76.0
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.5e-49 197.6 145 70.3
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.6e-48 196.1 129 76.0
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.8e-47 192.6 115 81.7
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.6e-46 188.7 129 70.5
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.4e-46 188.0 148 66.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.4e-46 188.0 115 80.0
Dinv07524 Davidia involucrata HOM05D002352 ORTHO05D003724 7.5e-46 187.2 116 81.0
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.4e-44 181.0 128 71.9
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 4.5e-43 177.9 129 65.9
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.8e-39 166.0 122 71.3
Actinidia39443 Actinidia chinensis HOM05D002352 ORTHO05D003724 5.9e-35 151.0 76 93.4
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.9e-33 146.0 78 88.5
Ah.09g235800 Amaranthus hybridus HOM05D002352 ORTHO05D003724 9.5e-33 143.7 82 85.4
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 3.0e-26 122.1 117 57.3
Rhsim10G0085900 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.0e-26 121.3 117 56.4
Rhsim10G0093300 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.5e-25 119.8 117 55.6
Hund23686 Selenicereus undatus HOM05D002352 ORTHO05D003724 7.3e-25 117.5 77 77.9
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 2.8e-24 115.5 76 80.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 8.0e-24 114.0 76 78.9
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 1.7e-18 96.3 126 42.1
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.1e-08 62.8 41 65.9
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 4.7e-08 61.6 138 33.3
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.6e-06 55.8 121 33.1


User provided reference genes

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