Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C279G11 Lonicera japonica HOM05D003710 ORTHO05D008843 4.1e-122 441.4 223 100.0
CSS0031757 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 2.8e-46 189.5 216 45.4
Oeu014712.1 Olea europaea HOM05D003710 ORTHO05D005250 1.4e-45 187.2 218 45.0
Oeu038209.1 Olea europaea HOM05D003710 ORTHO05D005250 6.8e-45 184.9 218 48.6
Actinidia05569 Actinidia chinensis HOM05D003710 ORTHO05D005250 1.5e-44 183.7 216 45.8
CSS0004306 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 3.4e-44 182.6 216 45.4
Dinv40474 Davidia involucrata HOM05D003710 ORTHO05D005250 2.9e-43 179.5 216 43.5
Lj4g0027727 Lotus japonicus HOM05D003710 ORTHO05D005250 8.4e-43 177.9 218 43.6
MSTRG.14675 Avicennia marina HOM05D003710 ORTHO05D005250 1.1e-42 177.6 224 42.4
Dinv18991 Davidia involucrata HOM05D003710 ORTHO05D005250 5.4e-42 175.3 221 43.4
Medtr4g091320 Medicago truncatula HOM05D003710 ORTHO05D005250 9.2e-42 174.5 219 42.5
Peaxi162Scf00619g00092 Petunia axillaris HOM05D003710 ORTHO05D005250 9.2e-42 174.5 222 41.0
Ca_18478_v3 Cicer arietinum L. HOM05D003710 ORTHO05D005250 1.2e-41 174.1 219 42.5
Eucgr.D00719 Eucalyptus grandis HOM05D003710 ORTHO05D005250 3.5e-41 172.6 222 43.7
Cc02_g12370 Coffea canephora HOM05D003710 ORTHO05D005250 4.6e-41 172.2 215 43.3
Glyma.07G189700 Glycine max HOM05D003710 ORTHO05D005250 6.0e-41 171.8 216 42.6
Rhsim02G0119400 Rhododendron simsii HOM05D003710 ORTHO05D005250 7.8e-41 171.4 217 42.4
TAR627G0563 Trochodendron aralioides HOM05D003710 ORTHO05D005250 7.8e-41 171.4 217 44.2
Glyma.08G059600 Glycine max HOM05D003710 ORTHO05D005250 1.0e-40 171.0 218 42.2
Hma1.2p1_0144F.1_g064590 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 1.0e-40 171.0 222 43.2
Solyc02g079200.1 Solanum lycopersicum HOM05D003710 ORTHO05D005250 3.0e-40 169.5 222 40.1
Sed0006031 Sechium edule HOM05D003710 ORTHO05D005250 3.9e-40 169.1 218 40.4
CiPaw.09G157600 Carya illinoinensis HOM05D003710 ORTHO05D005250 6.6e-40 168.3 218 39.9
Oeu036687.1 Olea europaea HOM05D003710 ORTHO05D005250 6.6e-40 168.3 218 41.7
Phvul.002G221300 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 6.6e-40 168.3 217 41.9
Sopen02g024000 Solanum pennellii HOM05D003710 ORTHO05D005250 6.6e-40 168.3 222 39.6
MSTRG.13179 Avicennia marina HOM05D003710 ORTHO05D005250 8.6e-40 167.9 224 40.2
Nitab4.5_0008791g0010 Nicotiana tabacum HOM05D003710 ORTHO05D005250 1.1e-39 167.5 222 38.3
VMungo0251G0300 Vigna mungo HOM05D003710 ORTHO05D005250 1.1e-39 167.5 217 41.9
PGSC0003DMG400022403 Solanum tuberosum HOM05D003710 ORTHO05D005250 1.5e-39 167.2 222 39.2
Lalb_Chr09g0327311 Lupinus albus HOM05D003710 ORTHO05D005250 1.9e-39 166.8 218 42.2
TWI38G2371 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 1.9e-39 166.8 219 43.4
ClCG03G005500 Citrullus lanatus HOM05D003710 ORTHO05D005250 2.5e-39 166.4 216 40.3
Lalb_Chr16g0383391 Lupinus albus HOM05D003710 ORTHO05D005250 2.5e-39 166.4 218 41.7
MELO3C002554.2 Cucumis melo HOM05D003710 ORTHO05D005250 3.3e-39 166.0 216 40.3
CsaV3_1G011760 Cucumis sativus L. HOM05D003710 ORTHO05D005250 3.3e-39 166.0 216 40.3
CiPaw.10G118800 Carya illinoinensis HOM05D003710 ORTHO05D005250 5.6e-39 165.2 216 40.7
Cfa000347 Carpinus fangiana HOM05D003710 ORTHO05D005250 1.2e-38 164.1 218 39.9
VMungo0540G1761 Vigna mungo HOM05D003710 ORTHO05D005250 1.6e-38 163.7 216 38.9
Lj6g0025319 Lotus japonicus HOM05D003710 ORTHO05D005250 2.1e-38 163.3 216 40.7
MBI02_g47448_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 2.1e-38 163.3 218 39.0
Phvul.006G192500 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 2.1e-38 163.3 221 38.0
Haze_06581 Corylus avellana HOM05D003710 ORTHO05D005250 2.8e-38 162.9 218 39.4
Cpa.g.sc27.132 Carica papaya HOM05D003710 ORTHO05D005250 3.6e-38 162.5 223 41.3
Lalb_Chr20g0122311 Lupinus albus HOM05D003710 ORTHO05D005250 3.6e-38 162.5 220 40.9
THA.LOC104809545 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 3.6e-38 162.5 223 39.9
GSVIVG01003182001 Vitis vinifera HOM05D003710 ORTHO05D005250 3.6e-38 162.5 216 40.3
Lj1P1213T32 Lonicera japonica HOM05D003710 ORTHO05D005250 6.2e-38 161.8 222 42.3
Lalb_Chr18g0059951 Lupinus albus HOM05D003710 ORTHO05D005250 6.2e-38 161.8 220 41.4
Nn1g03878 Nelumbo nucifera HOM05D003710 ORTHO05D005250 6.2e-38 161.8 210 42.4
TWI38G1538 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 6.2e-38 161.8 217 42.9
Glyma.13G246700 Glycine max HOM05D003710 ORTHO05D005250 8.1e-38 161.4 216 39.8
arahy.Tifrunner.gnm1.ann1.FW8YYF Arachis hypogaea HOM05D003710 ORTHO05D005250 1.1e-37 161.0 218 39.4
A09p16800 Brassica napus HOM05D003710 ORTHO05D005250 1.1e-37 161.0 218 40.8
BraA09t37317Z Brassica rapa HOM05D003710 ORTHO05D005250 1.1e-37 161.0 218 40.8
Ah.09g236190 Amaranthus hybridus HOM05D003710 ORTHO05D005250 1.4e-37 160.6 217 40.1
CAN.G424.19 Capsicum annuum HOM05D003710 ORTHO05D005250 1.4e-37 160.6 212 39.6
Gohir.D05G168800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.4e-37 160.6 218 40.8
Gorai.009G174000 Gossypium raimondii HOM05D003710 ORTHO05D005250 1.4e-37 160.6 218 40.8
QL05p081253 Quercus lobata HOM05D003710 ORTHO05D005250 1.4e-37 160.6 218 37.6
Thecc.06G200200 Theobroma cacao HOM05D003710 ORTHO05D005250 1.4e-37 160.6 218 39.9
Manes.16G020200 Manihot esculenta HOM05D003710 ORTHO05D005250 1.8e-37 160.2 213 41.3
THA.LOC104819023 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 2.4e-37 159.8 223 38.6
Duzib160G0368 Durio zibethinus HOM05D003710 ORTHO05D005250 3.1e-37 159.5 223 39.5
TPR.G15384 Trifolium pratense HOM05D003710 ORTHO05D005250 3.1e-37 159.5 220 40.9
Oeu038211.1 Olea europaea HOM05D003710 ORTHO05D005250 4.0e-37 159.1 194 47.4
CANSAT56G1827 Cannabis sativa HOM05D003710 ORTHO05D005250 5.2e-37 158.7 218 40.4
FAN21G1071 Fragaria x ananassa HOM05D003710 ORTHO05D005250 5.2e-37 158.7 223 37.7
FAN16G2996 Fragaria x ananassa HOM05D003710 ORTHO05D005250 8.9e-37 157.9 223 38.1
Sed0008753 Sechium edule HOM05D003710 ORTHO05D005250 1.2e-36 157.5 217 37.8
BcaB07g31272 Brassica carinata HOM05D003710 ORTHO05D005250 1.5e-36 157.1 219 40.6
BolC9t54966H Brassica oleracea HOM05D003710 ORTHO05D005250 1.5e-36 157.1 218 39.9
COL.COLO4_31591 Corchorus olitorius HOM05D003710 ORTHO05D005250 1.5e-36 157.1 211 41.2
Sp2g03150 Schrenkiella parvula HOM05D003710 ORTHO05D005250 1.5e-36 157.1 218 39.9
TAR624G0426 Trochodendron aralioides HOM05D003710 ORTHO05D005250 1.5e-36 157.1 209 43.1
Gohir.A05G165800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 2.0e-36 156.8 218 40.4
BcaC04g22323 Brassica carinata HOM05D003710 ORTHO05D005250 2.6e-36 156.4 218 40.4
FAN25G1364 Fragaria x ananassa HOM05D003710 ORTHO05D005250 2.6e-36 156.4 223 37.7
Gohir.D10G022200 Gossypium hirsutum HOM05D003710 ORTHO05D005250 2.6e-36 156.4 218 39.0
Manes.17G033200 Manihot esculenta HOM05D003710 ORTHO05D005250 2.6e-36 156.4 216 41.2
arahy.Tifrunner.gnm1.ann1.LGD9DB Arachis hypogaea HOM05D003710 ORTHO05D005250 3.4e-36 156.0 218 39.0
FvH4_3g03930 Fragaria vesca HOM05D003710 ORTHO05D005250 3.4e-36 156.0 223 37.7
C09p20690 Brassica napus HOM05D003710 ORTHO05D005250 4.4e-36 155.6 218 40.4
CDE05G3638 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 7.6e-36 154.8 218 37.2
AUR62014713 Chenopodium quinoa HOM05D003710 ORTHO05D005250 7.6e-36 154.8 209 42.1
AL1G22280 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 9.9e-36 154.5 216 40.7
Hma1.2p1_1182F.1_g264790 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 9.9e-36 154.5 208 41.3
Gohir.A06G123400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.3e-35 154.1 219 40.2
SGA_v2.0_scaffold159G37691 Striga asiatica HOM05D003710 ORTHO05D005250 1.3e-35 154.1 224 38.4
Duzib235G1103 Durio zibethinus HOM05D003710 ORTHO05D005250 1.7e-35 153.7 211 40.8
Gohir.D06G128300 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.7e-35 153.7 219 40.6
Gorai.010G149900 Gossypium raimondii HOM05D003710 ORTHO05D005250 1.7e-35 153.7 219 40.6
Aqoxy1G03894 Aquilegia oxysepala HOM05D003710 ORTHO05D005250 2.2e-35 153.3 221 38.0
Migut.H01519 Erythranthe guttata HOM05D003710 ORTHO05D005250 2.2e-35 153.3 210 38.1
Gohir.A10G021400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 2.2e-35 153.3 218 38.5
Gorai.011G023300 Gossypium raimondii HOM05D003710 ORTHO05D005250 2.2e-35 153.3 218 38.5
SalBow8G3579 Salvia bowleyana HOM05D003710 ORTHO05D005250 2.9e-35 152.9 211 37.0
CAN.G1679.1 Capsicum annuum HOM05D003710 ORTHO05D005250 3.8e-35 152.5 213 38.0
AUR62012482 Chenopodium quinoa HOM05D003710 ORTHO05D005250 3.8e-35 152.5 209 40.7
Nn1g06778 Nelumbo nucifera HOM05D003710 ORTHO05D005250 3.8e-35 152.5 209 40.2
Sp1g09920 Schrenkiella parvula HOM05D003710 ORTHO05D005250 4.9e-35 152.1 218 38.5
PGR004G0177 Punica granatum HOM05D003710 ORTHO05D005250 8.4e-35 151.4 213 40.8
Thhalv10007228m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 1.4e-34 150.6 218 38.5
FAN11G0401 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.9e-34 150.2 223 36.8
Potri.011G042300 Populus trichocarpa HOM05D003710 ORTHO05D005250 1.9e-34 150.2 218 39.4
Thhalv10023383m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 2.4e-34 149.8 218 38.5
EL10Ac8g20535 Beta vulgaris HOM05D003710 ORTHO05D005250 3.2e-34 149.4 217 39.2
Ciclev10014752m.g Citrus clementina HOM05D003710 ORTHO05D005250 3.2e-34 149.4 216 39.8
AL2G14980 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 4.2e-34 149.1 218 38.5
HanXRQChr01g0004811 Helianthus annuus HOM05D003710 ORTHO05D005250 4.2e-34 149.1 212 39.2
Lsat_1_v5_gn_4_56781 Lactuca sativa HOM05D003710 ORTHO05D005250 4.2e-34 149.1 190 43.2
Potri.004G033800 Populus trichocarpa HOM05D003710 ORTHO05D005250 9.3e-34 147.9 218 39.9
CDE02G4372 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 1.2e-33 147.5 211 42.2
Prupe.4G037700 Prunus persica HOM05D003710 ORTHO05D005250 1.2e-33 147.5 212 37.3
PSO210G5044 Papaver somniferum HOM05D003710 ORTHO05D005250 1.6e-33 147.1 219 38.8
Sabra11G0029000 Salix brachista HOM05D003710 ORTHO05D005250 2.1e-33 146.7 223 38.1
Aa31LG2G9320 Aethionema arabicum HOM05D003710 ORTHO05D005250 3.5e-33 146.0 219 37.9
CARHR051290 Cardamine hirsuta HOM05D003710 ORTHO05D005250 3.5e-33 146.0 218 39.9
AT1G61350 Arabidopsis thaliana HOM05D003710 ORTHO05D005250 6.0e-33 145.2 218 37.6
Carub.0002s0382 Capsella rubella HOM05D003710 ORTHO05D005250 6.0e-33 145.2 218 38.1
Sabra04G0019500 Salix brachista HOM05D003710 ORTHO05D005250 7.8e-33 144.8 218 38.1
Carub.0001s1087 Capsella rubella HOM05D003710 ORTHO05D005250 1.0e-32 144.4 218 37.6
PSO832G4111 Papaver somniferum HOM05D003710 ORTHO05D005250 1.0e-32 144.4 217 38.7
RcHm_v2.0_Chr5g0006221 Rosa chinensis HOM05D003710 ORTHO05D005250 1.3e-32 144.1 218 35.8
DCAR_004141 Daucus carota HOM05D003710 ORTHO05D005250 2.3e-32 143.3 217 37.8
MD10G1303900 Malus domestica HOM05D003710 ORTHO05D005250 3.0e-32 142.9 210 34.8
Eucgr.E03694 Eucalyptus grandis HOM05D003710 ORTHO05D005250 3.9e-32 142.5 211 39.3
Eucgr.E03808 Eucalyptus grandis HOM05D003710 ORTHO05D005250 6.6e-32 141.7 211 39.3
Sc17g0006660 Simmondsia chinensis HOM05D003710 ORTHO05D005250 1.9e-31 140.2 219 38.4
Glyma.15G067200 Glycine max HOM05D003710 ORTHO05D005250 2.5e-31 139.8 217 37.8
MBI18_g07611_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 4.3e-31 139.0 210 39.0
Nitab4.5_0000190g0040 Nicotiana tabacum HOM05D003710 ORTHO05D005250 1.3e-30 137.5 189 38.1
Lsat_1_v5_gn_1_122121 Lactuca sativa HOM05D003710 ORTHO05D005250 2.1e-30 136.7 202 36.6
unitig_749.g13637 Utricularia gibba HOM05D003710 ORTHO05D005250 3.6e-30 136.0 213 35.2
MD05G1326000 Malus domestica HOM05D003710 ORTHO05D005250 6.2e-30 135.2 210 34.8
TAR626G0587 Trochodendron aralioides HOM05D003710 ORTHO05D005250 6.2e-30 135.2 184 43.5
Lj5C372T3 Lonicera japonica HOM05D003710 ORTHO05D234170 8.1e-30 134.8 221 42.5
Atru.chr10.2018 Acer truncatum HOM05D003710 ORTHO05D005250 1.2e-28 131.0 220 37.3
Ah.14g088900 Amaranthus hybridus HOM05D003710 ORTHO05D005250 1.2e-28 131.0 192 37.0
Actinidia24057 Actinidia chinensis HOM05D003710 ORTHO05D005250 1.3e-27 127.5 173 41.6
HanXRQChr16g0517601 Helianthus annuus HOM05D003710 ORTHO05D005250 3.8e-27 125.9 209 36.8
ATR0693G260 Amborella trichopoda HOM05D003710 ORTHO05D005250 1.4e-26 124.0 207 36.2
ECA234G2608 Erigeron canadensis HOM05D003710 ORTHO05D005250 7.9e-25 118.2 130 49.2
HPP92_014081 Vanilla planifolia HOM05D003710 ORTHO05D005250 3.0e-24 116.3 188 36.7
Os02g0160250 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 2.4e-21 106.7 224 31.2
HPP92_016552 Vanilla planifolia HOM05D003710 ORTHO05D005250 4.0e-21 105.9 225 30.2
Migut.H01147 Erythranthe guttata HOM05D003710 ORTHO05D005250 3.8e-19 99.4 116 42.2
Os07g0560300 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 4.9e-19 99.0 193 32.6
Cfa016086 Carpinus fangiana HOM05D003710 ORTHO05D005250 4.2e-18 95.9 103 45.6
Zm00001eb324200 Zea mays HOM05D003710 ORTHO05D005250 7.9e-17 91.7 207 30.0
unitig_26.g9374 Utricularia gibba HOM05D003710 ORTHO05D005250 5.1e-16 89.0 130 37.7
Zm00001eb106840 Zea mays HOM05D003710 ORTHO05D005250 1.5e-15 87.4 198 29.3
Zm00001eb225480 Zea mays HOM05D003710 ORTHO05D005250 9.6e-15 84.7 223 28.7
Zm00001eb139280 Zea mays HOM05D003710 ORTHO05D005250 2.1e-14 83.6 156 34.0
Os06g0683950 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 9.0e-13 78.2 210 26.2
Manes.12G069600 Manihot esculenta HOM05D001356 ORTHO05D008843 1.0e-11 74.7 200 28.0
Psat7g108400 Pisum sativum HOM05D003710 ORTHO05D005250 4.9e-11 72.4 189 28.0
SEGI_41007 Sequoiadendron giganteum HOM05D001356 ORTHO05D008843 1.1e-10 71.2 217 27.2
CDE07G0722 Ceratophyllum demersum HOM05D001356 ORTHO05D008843 3.2e-10 69.7 205 26.3
QL08p030667 Quercus lobata HOM05D001356 ORTHO05D008843 1.6e-09 67.4 208 26.0
CANSAT64G2058 Cannabis sativa HOM05D001356 ORTHO05D008843 2.7e-09 66.6 213 24.4
CAN.G637.60 Capsicum annuum HOM05D001356 ORTHO05D005768 4.6e-09 65.9 213 28.6
ECA248G2720 Erigeron canadensis HOM05D003710 ORTHO05D005250 6.0e-09 65.5 97 35.1
SGA_v2.0_scaffold70G23388 Striga asiatica HOM05D001356 ORTHO05D008843 7.9e-09 65.1 215 24.7
ATR0582G114 Amborella trichopoda HOM05D001356 ORTHO05D005768 1.8e-08 63.9 142 31.7
MSTRG.14135 Avicennia marina HOM05D001356 ORTHO05D008843 3.0e-08 63.2 209 25.8
SGA_v2.0_scaffold34G13759 Striga asiatica HOM05D001356 ORTHO05D008843 3.0e-08 63.2 217 24.9
DCAR_016359 Daucus carota HOM05D001356 ORTHO05D005768 3.9e-08 62.8 145 32.4
Lj9A484T65 Lonicera japonica HOM05D001356 ORTHO05D005768 3.9e-08 62.8 170 29.4
SalBow1G8237 Salvia bowleyana HOM05D001356 ORTHO05D008843 8.7e-08 61.6 200 25.5
SalBow1G7783 Salvia bowleyana HOM05D001356 ORTHO05D008843 1.5e-07 60.8 200 26.5
PGR044G0706 Punica granatum HOM05D001356 ORTHO05D005768 3.3e-07 59.7 217 27.6
SalBow7G4227 Salvia bowleyana HOM05D001356 ORTHO05D008843 9.6e-07 58.2 211 26.1
Solyc03g097740.1 Solanum lycopersicum HOM05D001356 ORTHO05D005768 1.6e-06 57.4 193 28.5
Sopen03g028480 Solanum pennellii HOM05D001356 ORTHO05D005768 1.6e-06 57.4 193 28.5
Lsat_1_v5_gn_1_32360 Lactuca sativa HOM05D001356 ORTHO05D005768 2.1e-06 57.0 190 27.9
PGSC0003DMG400012021 Solanum tuberosum HOM05D001356 ORTHO05D005768 2.1e-06 57.0 193 28.5
TAR629G2440 Trochodendron aralioides HOM05D000120 ORTHO05D000068 2.8e-06 56.6 86 40.7
MBI16_g26183_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D008843 4.8e-06 55.8 216 24.5


User provided reference genes

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