Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 2470.7 1341 100.0
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1600.1 1538 60.3
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1484.2 1544 59.3
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1462.2 1418 59.0
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1447.6 1411 59.0
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1415.6 1405 60.1
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1402.9 1378 60.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1400.2 1368 56.1
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1388.2 1396 60.3
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1374.4 1476 55.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1363.2 1420 55.6
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1345.9 1393 55.9
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1343.9 1390 57.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1332.0 1451 54.4
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1322.4 1431 54.6
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1321.2 1384 57.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1310.0 1372 55.9
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1298.1 1387 55.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1290.8 1436 54.3
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1285.0 1381 53.1
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1278.5 1377 54.2
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1275.4 1502 50.2
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1269.6 1364 54.8
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1268.4 1532 51.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1257.3 1519 49.2
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1256.9 1471 51.5
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1250.3 1393 52.0
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1250.0 1541 49.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1247.3 1558 49.2
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1237.6 1446 53.4
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1228.8 1350 53.3
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1214.5 1494 49.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1213.7 1364 52.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1212.2 1394 51.9
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1212.2 1456 50.8
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1392 51.8
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1512 50.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1205.7 1361 55.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1205.3 1492 48.6
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1202.6 1370 51.9
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1200.7 1361 55.4
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1199.5 1391 51.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1196.0 1356 51.8
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1192.9 1459 51.6
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1191.0 1448 50.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1188.3 1383 49.5
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1188.3 1423 50.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1186.0 1376 51.3
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1183.7 1394 49.1
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1179.9 1521 47.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1179.1 1353 51.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1177.9 1543 46.2
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1176.4 1485 48.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1175.2 1357 50.4
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1170.2 1500 45.9
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1169.5 1357 51.1
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1166.0 1354 50.7
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1365 51.2
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1158.3 1383 52.9
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1157.9 1484 46.5
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1152.5 1379 49.6
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1146.7 1333 52.7
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1371 49.6
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1140.2 1578 45.1
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1137.9 1442 50.8
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1130.9 1367 50.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1130.5 1346 54.0
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1120.9 873 68.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 0.0e+00 1114.8 1341 53.4
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1112.4 1349 49.7
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1110.1 1555 45.4
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1109.7 1360 50.1
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1107.8 1791 41.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1104.0 1384 49.6
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 1097.8 1369 50.1
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1075.1 1336 49.7
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 4.0e-310 1068.5 1339 49.3
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 6.5e-308 1061.2 1335 47.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 9.4e-307 1057.4 1449 47.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 4.1e-302 1042.0 874 62.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.1e-302 1042.0 1372 50.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.1e-299 1033.9 1404 45.9
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 1.8e-297 1026.5 1475 43.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.2e-290 1003.8 1459 47.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 6.1e-290 1001.5 1195 49.5
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.1e-282 976.5 1295 49.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.5e-280 970.3 1387 48.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.0e-276 955.3 1285 48.7
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.7e-274 948.7 940 56.5
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.9e-271 938.7 737 68.0
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 8.6e-252 874.8 1337 44.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 5.8e-240 835.5 802 57.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 6.4e-231 805.4 2338 31.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 5.8e-224 782.3 1366 37.4
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.9e-219 767.3 1140 42.1
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.4e-185 654.1 1330 37.1
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.6e-181 641.3 692 50.9
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.7e-178 630.2 539 64.0
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 3.5e-176 623.6 1480 32.3
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.4e-163 580.1 827 44.7
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-156 558.5 877 40.0
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.4e-155 553.9 1180 35.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.7e-144 517.7 1350 30.7
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.1e-137 493.0 559 51.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 6.6e-135 486.5 406 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.2e-115 422.5 1411 28.8
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.1e-110 406.0 414 59.4
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 3.2e-105 387.9 1571 28.1
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.3e-103 381.7 390 58.2
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 2.5e-102 378.3 499 42.1
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.4e-100 371.7 537 41.0
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.9e-94 352.1 396 52.5
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.4e-92 345.9 1412 27.7
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.5e-89 335.1 310 58.7
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 5.5e-89 334.0 348 53.7
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-81 309.3 290 52.8
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.9e-71 274.6 237 63.7
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 8.2e-69 266.9 225 65.8
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-60 240.0 766 29.5
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.1e-56 225.7 286 46.5
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.1e-52 211.8 237 51.5
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 5.0e-50 204.5 157 70.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-42 179.5 234 42.3
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-42 177.9 720 26.2
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.1e-40 172.6 152 63.2
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 2.3e-39 169.1 121 71.9
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 4.4e-38 164.9 151 60.9
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.5e-35 155.2 708 26.1
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 6.6e-34 151.0 412 29.1
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.4e-28 132.5 401 27.7
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 6.2e-24 117.9 102 58.8
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 6.2e-24 117.9 181 40.9
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 6.4e-21 107.8 366 25.4
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.4e-20 106.7 72 69.4
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 6.6e-18 97.8 100 58.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.1e-15 89.0 253 28.5
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.9e-13 81.6 73 60.3
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.9e-13 81.6 92 56.5
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.1e-09 70.5 166 32.5
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 4.3e-09 68.6 106 38.7
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 5.6e-09 68.2 253 26.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.1e-07 63.9 53 54.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.1e-07 63.9 50 56.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.4e-07 62.8 131 37.4


User provided reference genes

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