Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 5.1e-265 917.1 455 100.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 2.0e-213 745.7 490 77.8
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.5e-211 739.6 478 77.6
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.5e-211 738.8 479 77.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 5.8e-208 727.6 481 75.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-207 726.1 483 74.7
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 7.1e-206 720.7 488 74.6
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 7.1e-206 720.7 477 75.1
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 7.1e-206 720.7 477 75.1
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.0e-204 716.8 479 74.7
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.0e-204 716.8 485 74.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.3e-204 715.7 478 74.5
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.9e-204 714.9 479 74.7
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.9e-204 714.9 480 74.6
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.9e-204 714.9 478 74.1
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 5.1e-204 714.5 479 74.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.5e-203 713.0 477 75.7
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.5e-203 712.2 477 75.1
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.3e-203 711.4 478 74.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 7.3e-203 710.7 477 74.0
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.3e-203 710.7 477 73.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.2e-202 709.9 479 74.1
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.1e-202 709.1 476 74.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 3.6e-202 708.4 481 73.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.7e-202 708.0 479 73.1
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 8.1e-202 707.2 505 70.5
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.4e-201 706.4 476 73.9
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.3e-201 705.7 479 72.9
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.3e-201 705.7 476 74.4
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 3.1e-201 705.3 476 73.7
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 5.2e-201 704.5 466 75.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 6.8e-201 704.1 467 75.4
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.4e-200 701.8 478 73.8
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.4e-200 701.8 479 72.2
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.4e-200 701.4 483 73.3
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 4.4e-200 701.4 466 75.3
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 5.8e-200 701.0 476 73.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-199 699.1 483 71.8
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.9e-199 698.7 476 73.3
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.9e-198 696.0 483 71.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.9e-198 696.0 472 71.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-198 694.9 495 70.3
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.1e-198 694.9 480 72.1
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 7.1e-198 694.1 476 73.1
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 9.2e-198 693.7 479 72.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.2e-197 693.3 481 72.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.6e-197 693.0 476 73.1
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.1e-197 692.6 480 72.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.1e-197 692.6 466 73.6
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.7e-197 692.2 476 73.3
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 3.5e-197 691.8 479 73.7
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.3e-196 689.9 466 73.6
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.0e-196 688.7 476 72.7
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.9e-196 688.3 476 73.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 6.6e-196 687.6 476 72.5
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 8.6e-196 687.2 476 71.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.2e-194 683.3 475 70.7
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.2e-194 683.3 479 71.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.2e-194 683.3 408 79.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.1e-194 682.6 466 72.7
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 4.7e-194 681.4 486 71.4
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.2e-194 681.0 475 71.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.2e-194 681.0 484 71.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 8.1e-194 680.6 476 72.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 8.1e-194 680.6 434 77.6
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.1e-193 680.2 477 71.3
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.4e-193 679.9 474 70.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.8e-193 679.5 479 70.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 2.4e-193 679.1 479 71.8
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.5e-192 676.4 477 70.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.4e-192 674.9 477 71.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 4.9e-191 671.4 481 70.5
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-190 670.2 516 66.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.4e-190 669.1 475 69.3
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 2.4e-190 669.1 481 69.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-189 666.8 507 66.5
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.2e-189 666.8 480 69.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 7.8e-189 664.1 475 68.8
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 6.6e-188 661.0 466 72.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.9e-187 659.4 477 70.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.3e-187 657.5 470 70.0
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 9.6e-187 657.1 475 68.8
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.6e-186 656.4 408 77.5
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 4.8e-186 654.8 466 69.3
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 6.2e-186 654.4 476 68.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.6e-184 649.0 476 67.2
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.3e-183 646.7 567 59.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.8e-183 645.2 487 66.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 4.9e-183 644.8 476 67.2
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 4.9e-183 644.8 476 67.0
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.1e-182 643.7 481 67.8
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-182 642.9 476 66.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.9e-182 642.9 476 66.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.4e-182 642.5 461 71.8
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 3.2e-182 642.1 475 66.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.5e-181 638.6 476 66.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.5e-181 638.6 476 66.8
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.9e-180 635.2 513 64.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.1e-179 633.6 476 65.1
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.3e-179 632.1 489 67.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 9.6e-179 630.6 500 63.8
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 9.6e-179 630.6 474 65.6
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 4.8e-178 628.2 487 66.5
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 8.1e-178 627.5 421 72.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 3.4e-176 622.1 408 75.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 6.4e-175 617.8 429 73.2
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.8e-172 609.8 493 62.5
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 9.0e-169 597.4 477 64.4
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.1e-166 590.5 555 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.4e-161 572.8 486 58.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.2e-160 570.5 471 61.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.3e-159 567.0 413 70.2
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.7e-159 566.6 477 62.7
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 2.9e-159 565.8 393 73.0
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 6.1e-157 558.1 486 57.2
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.3e-154 550.4 476 56.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.3e-143 513.8 459 59.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.2e-134 482.3 356 70.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-128 463.8 493 52.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.4e-105 387.5 253 71.1
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.6e-88 329.3 598 36.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.4e-84 317.0 523 39.4
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.3e-82 311.2 258 62.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.7e-80 303.5 182 73.6
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.3e-78 296.2 255 59.2
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.6e-78 295.8 211 75.4
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.6e-77 293.1 384 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.6e-77 293.1 210 66.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 5.4e-65 252.7 541 33.5
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.0e-63 248.4 252 52.8
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.9e-63 246.5 174 64.9
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-55 221.1 435 36.3
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.1e-55 219.5 181 70.2
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.4e-49 201.4 171 61.4
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.4e-44 184.1 488 30.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.5e-43 179.9 380 32.9
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.3e-38 163.3 212 47.6
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.4e-36 157.5 414 28.3
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.1e-36 156.8 443 27.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.6e-35 154.1 222 42.8
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-25 121.7 164 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.2e-17 93.6 104 51.0
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-11 73.9 62 59.7
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-10 71.6 70 55.7
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 9.4e-09 65.9 78 48.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.1e-08 64.7 57 59.6
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.1e-08 64.7 39 82.1
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.1e-08 63.2 83 48.2


User provided reference genes

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