Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 1.3e-97 359.8 182 100.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.8e-51 206.5 157 65.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.8e-51 206.5 157 65.6
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.8e-51 204.5 154 64.9
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 4.1e-48 195.3 177 55.4
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.6e-46 188.0 173 55.5
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 3.3e-45 185.7 158 62.0
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.3e-45 184.5 179 56.4
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 3.6e-44 182.2 177 54.8
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 8.1e-44 181.0 183 53.0
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.1e-43 180.6 175 53.1
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 6.8e-43 177.9 186 53.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.2e-42 177.2 177 56.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.5e-42 176.8 169 56.2
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.0e-42 176.4 178 55.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.9e-41 171.8 163 54.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 4.9e-41 171.8 163 54.6
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.9e-40 169.9 178 50.0
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 2.4e-40 169.5 183 49.2
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 4.1e-40 168.7 174 50.0
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 5.4e-40 168.3 166 55.4
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.2e-39 167.2 173 56.1
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.1e-39 166.4 145 56.6
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.5e-39 165.6 185 47.6
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.6e-39 165.2 176 51.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 6.0e-39 164.9 185 49.7
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 6.0e-39 164.9 183 47.5
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 6.0e-39 164.9 172 51.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.3e-38 163.7 185 47.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 2.3e-38 162.9 183 53.0
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.3e-38 162.9 179 49.2
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.3e-38 162.9 150 56.7
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 3.9e-38 162.2 171 50.3
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.5e-37 160.2 163 50.9
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-37 160.2 144 52.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.5e-37 160.2 171 51.5
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.5e-37 159.5 135 59.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.3e-37 159.1 150 57.3
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.6e-37 158.3 147 54.4
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.2e-36 157.1 147 56.5
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.6e-36 156.8 167 50.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.1e-36 156.4 157 53.5
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.1e-36 156.4 157 54.1
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 4.7e-36 155.2 167 52.1
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 6.2e-36 154.8 181 50.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.4e-35 153.7 162 51.9
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.4e-35 153.7 145 53.8
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.8e-35 153.3 179 47.5
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.8e-35 153.3 169 50.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.1e-35 152.5 152 53.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.0e-35 152.1 181 48.1
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.0e-35 152.1 152 52.6
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.0e-35 152.1 151 51.0
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.0e-35 152.1 152 52.6
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 6.8e-35 151.4 179 45.8
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 8.9e-35 151.0 162 51.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.2e-34 150.6 145 53.1
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.0e-34 149.8 144 53.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 2.6e-34 149.4 147 51.7
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.8e-34 148.3 186 45.7
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.8e-34 148.3 171 48.5
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 7.6e-34 147.9 146 56.2
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 9.9e-34 147.5 168 50.6
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 9.9e-34 147.5 206 43.7
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.7e-33 146.7 168 47.0
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.7e-33 146.7 127 56.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-33 146.4 181 45.3
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.2e-33 146.4 181 45.3
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.2e-33 146.4 166 48.2
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.2e-33 146.4 152 48.7
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-33 146.0 169 47.3
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.9e-33 146.0 129 54.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.9e-33 145.2 153 49.7
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.4e-33 144.8 153 49.7
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.4e-33 144.8 176 43.8
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.4e-33 144.8 98 67.3
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 6.4e-33 144.8 169 48.5
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-32 144.1 174 46.0
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 2.4e-32 142.9 166 47.0
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.2e-32 142.5 164 45.1
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 4.1e-32 142.1 155 46.5
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.1e-32 142.1 193 45.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 5.4e-32 141.7 144 51.4
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 7.1e-32 141.4 154 48.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 7.1e-32 141.4 146 53.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 9.2e-32 141.0 152 48.7
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.2e-32 141.0 146 53.4
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.2e-31 140.6 178 43.8
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.1e-31 139.8 158 48.1
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.7e-31 139.4 140 51.4
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.0e-31 138.3 170 43.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 6.0e-31 138.3 146 52.1
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 7.8e-31 137.9 171 45.0
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 7.8e-31 137.9 172 45.3
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 7.8e-31 137.9 145 53.1
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.7e-30 136.7 184 41.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.7e-30 136.7 148 52.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.3e-30 136.3 172 44.8
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.1e-29 134.0 146 50.0
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.9e-29 133.3 137 49.6
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 3.3e-29 132.5 135 51.9
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 4.3e-29 132.1 138 54.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.8e-28 129.4 169 45.0
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 6.2e-28 128.3 156 43.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-27 127.5 139 47.5
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-27 127.5 139 47.5
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.4e-27 127.1 135 48.9
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.8e-27 126.7 139 46.8
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.8e-27 126.7 136 50.0
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.4e-27 126.3 136 46.3
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 4.0e-27 125.6 142 47.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.2e-27 125.2 140 45.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.2e-27 125.2 130 46.2
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-26 123.6 171 40.9
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 9.9e-26 120.9 122 51.6
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.9e-26 120.9 139 43.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.3e-25 120.6 190 41.6
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.7e-25 120.2 150 43.3
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-25 119.8 140 45.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 2.2e-25 119.8 145 49.7
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-25 119.4 136 44.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.9e-25 119.4 140 42.1
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.9e-25 119.4 179 41.3
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 3.8e-25 119.0 176 39.8
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-25 118.6 167 41.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.9e-25 118.6 138 42.8
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 6.4e-25 118.2 175 42.9
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 8.4e-25 117.9 138 42.0
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 8.4e-25 117.9 179 41.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.9e-24 116.7 162 42.0
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.4e-24 116.3 166 41.0
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-24 116.3 174 39.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.4e-24 116.3 142 44.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 3.2e-24 115.9 131 43.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-24 115.9 131 43.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 3.2e-24 115.9 138 42.0
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-24 115.5 143 42.0
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-24 115.5 176 39.8
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-24 115.5 143 42.0
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.2e-24 115.5 139 41.0
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-24 115.2 176 39.8
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.7e-23 112.8 131 42.7
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-23 112.8 131 42.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.5e-23 112.5 137 41.6
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.6e-23 112.1 138 41.3
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 6.0e-23 111.7 172 35.5
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 7.8e-23 111.3 135 41.5
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 7.8e-23 111.3 132 42.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-22 110.5 130 43.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-22 109.8 130 44.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.3e-22 109.8 130 44.6
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.3e-22 109.8 130 44.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.3e-22 109.8 137 43.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-22 109.4 144 39.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.9e-22 109.0 153 40.5
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.1e-21 107.5 130 42.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.3e-21 105.9 130 43.1
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 5.6e-21 105.1 130 42.3
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 7.3e-21 104.8 120 45.8
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.3e-21 104.8 130 42.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 9.6e-21 104.4 150 44.0
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 9.6e-21 104.4 161 36.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.6e-20 103.6 110 49.1
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.8e-20 102.1 130 41.5
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-19 100.5 131 42.7
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.4e-19 100.5 128 44.5
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 6.9e-19 98.2 136 39.0
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-18 96.7 130 40.8
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-18 96.7 130 40.8
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.0e-18 96.7 102 48.0
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-18 95.9 130 40.8
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-18 95.9 130 40.8
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 3.4e-18 95.9 130 40.8
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.5e-18 95.5 165 36.4
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 5.8e-18 95.1 120 41.7
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 2.1e-15 86.7 169 38.5
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-14 84.0 92 43.5
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.4e-13 78.2 89 46.1
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 8.4e-09 64.7 103 35.0


User provided reference genes

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