Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 0.0e+00 1602.4 793 100.0
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 0.0e+00 1088.6 792 68.8
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.2e-309 1066.2 789 69.1
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.3e-303 1046.2 794 65.4
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 1.2e-301 1039.6 792 65.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 6.6e-300 1033.9 793 64.4
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.9e-299 1032.3 789 67.4
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 7.3e-299 1030.4 792 64.8
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 2.3e-297 1025.4 791 64.9
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 2.4e-294 1015.4 799 63.7
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 9.2e-294 1013.4 806 63.4
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 5.0e-292 1007.7 790 63.7
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 4.3e-291 1004.6 801 63.5
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.6e-290 1002.7 802 63.7
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 2.3e-289 998.8 791 62.5
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 3.4e-288 995.0 789 63.9
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 9.8e-288 993.4 792 64.6
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 2.2e-287 992.3 805 61.7
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 1.1e-286 989.9 809 62.8
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 2.3e-284 982.2 806 62.8
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 5.1e-284 981.1 801 61.8
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 6.6e-284 980.7 813 63.0
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 3.3e-283 978.4 795 62.4
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.5e-280 969.5 805 60.5
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 2.6e-280 968.8 851 58.5
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 1.3e-279 966.5 627 75.4
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 2.9e-279 965.3 809 61.8
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 3.7e-279 964.9 821 58.8
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 4.9e-279 964.5 805 60.1
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 2.4e-278 962.2 795 62.0
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 3.2e-278 961.8 798 61.5
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 5.4e-278 961.1 797 62.5
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 1.7e-276 956.1 798 60.8
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 8.6e-276 953.7 861 58.9
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 5.6e-275 951.0 794 61.6
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 5.6e-275 951.0 789 60.3
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 7.3e-275 950.7 805 60.0
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 1.1e-273 946.8 795 61.0
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 1.1e-273 946.8 804 60.3
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 2.6e-272 942.2 795 60.9
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 2.6e-272 942.2 800 61.1
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 9.9e-272 940.3 795 61.3
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 3.8e-271 938.3 797 59.8
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 8.4e-271 937.2 800 60.6
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 7.1e-270 934.1 800 60.9
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 2.7e-269 932.2 793 61.0
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.0e-268 930.2 800 60.2
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 5.1e-268 927.9 803 60.4
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 1.1e-267 926.8 854 57.3
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 6.2e-266 921.0 793 57.8
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 6.9e-265 917.5 799 60.8
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.5e-264 916.4 801 59.2
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 9.9e-264 913.7 790 59.0
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 2.9e-263 912.1 793 57.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 4.6e-261 904.8 804 59.6
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 6.2e-258 894.4 794 56.8
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 1.4e-257 893.3 806 58.7
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 3.1e-257 892.1 795 57.4
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 3.1e-257 892.1 798 56.3
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.0e-256 889.4 812 56.7
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.6e-256 889.0 632 69.5
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.2e-255 885.9 812 56.7
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 3.3e-251 872.1 799 57.2
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 4.5e-248 861.7 749 61.0
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 2.9e-247 859.0 799 55.3
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 8.4e-247 857.4 791 56.8
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 1.2e-245 853.6 796 56.4
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 2.1e-245 852.8 793 54.9
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 3.0e-244 849.0 802 55.9
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 3.9e-244 848.6 836 55.3
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 2.5e-243 845.9 803 54.5
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 5.6e-243 844.7 799 54.2
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 3.7e-242 842.0 800 54.8
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 5.8e-240 834.7 802 54.2
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 7.6e-240 834.3 798 54.3
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 9.3e-238 827.4 799 54.2
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.2e-237 827.0 798 54.4
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.6e-237 826.6 800 54.1
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 1.6e-237 826.6 801 55.8
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 1.0e-231 807.4 797 53.1
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 2.9e-231 805.8 791 55.0
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 7.2e-230 801.2 767 54.5
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 1.6e-229 800.0 790 54.6
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 6.1e-229 798.1 797 52.7
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 6.1e-229 798.1 802 52.7
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 1.0e-220 770.8 785 53.2
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 7.4e-211 738.0 813 49.7
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 9.1e-209 731.1 791 48.9
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 1.3e-207 727.2 585 62.7
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 1.8e-201 706.8 672 54.6
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 6.5e-199 698.4 787 49.8
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 4.7e-197 692.2 648 56.9
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 3.2e-177 626.3 816 44.7
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 1.6e-168 597.4 604 53.5
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 1.2e-147 528.1 786 40.7
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 2.9e-146 523.5 794 43.6
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 5.1e-135 486.1 790 38.0
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 1.8e-103 381.3 859 33.2
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 7.4e-102 375.9 254 68.9
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 9.4e-97 359.0 298 61.1
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 6.1e-88 329.7 290 59.3
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 8.0e-88 329.3 290 59.0
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 8.0e-88 329.3 413 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 5.7e-86 323.2 864 31.1
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 4.1e-84 317.0 255 65.1
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 9.8e-78 295.8 256 61.3
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.8e-78 295.8 280 54.6
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.7e-58 231.9 182 62.1
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.3e-50 205.7 140 67.1
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 2.8e-48 198.0 207 53.1
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 5.8e-46 190.3 212 51.4
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 1.4e-44 185.7 168 52.4
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 4.6e-35 154.1 87 81.6
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 3.4e-30 137.9 289 33.9
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 1.7e-21 109.0 120 49.2
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-21 107.8 192 33.3
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 8.4e-21 106.7 832 22.5
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 4.3e-17 94.4 157 35.7
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 2.0e-14 85.5 70 55.7
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 3.5e-11 74.7 50 70.0
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 1.0e-10 73.2 49 67.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 5.1e-10 70.9 61 52.5


User provided reference genes

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