Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1961.8 1020 100.0
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1644.4 1094 79.1
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1623.6 1102 77.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1623.2 1093 78.0
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1598.9 1091 76.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1596.6 1081 77.5
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1588.5 1093 76.3
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1585.9 1085 76.6
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1580.5 1090 76.6
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1578.1 1080 76.9
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1577.8 1083 75.8
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1572.4 1094 75.4
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1570.8 1091 75.3
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1561.2 1083 76.4
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1085 75.6
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1557.3 1080 76.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1557.3 1086 75.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1544.6 1093 74.4
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1542.7 1076 75.3
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1542.7 1077 75.0
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1537.3 1091 74.4
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1533.9 1077 74.7
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1530.8 1092 73.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1530.4 1089 74.3
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1527.3 1085 74.6
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1522.7 1089 74.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1518.4 1090 73.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1517.3 1085 74.1
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1514.6 1085 73.8
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1514.2 1089 73.1
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1510.0 1092 72.6
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1509.6 1079 74.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1506.9 1081 73.1
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1506.1 1086 73.0
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1504.6 1039 76.3
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1500.7 1060 74.8
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1498.8 1158 70.5
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1497.6 1088 72.6
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1494.9 1098 72.3
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1492.2 1094 73.2
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1488.4 1077 73.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1488.0 1086 72.5
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1486.9 1080 73.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1484.5 1092 72.1
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1082 73.1
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1077 72.9
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1478.4 1075 72.4
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1474.9 1091 73.1
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1473.0 1089 70.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1471.4 1083 72.3
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1467.2 1111 71.6
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1466.1 1085 71.7
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1455.3 1090 70.1
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1448.3 1081 71.0
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1415.6 1080 70.4
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1407.1 1078 69.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1404.8 1078 69.1
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1404.0 1078 68.9
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1400.6 1076 68.4
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1400.2 1089 69.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1399.4 1085 68.5
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1396.7 1085 68.3
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1392.5 1078 69.9
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1080 69.4
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1135 66.6
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1384.8 1079 69.3
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1384.4 1101 67.4
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1383.2 1085 67.7
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1383.2 1085 67.7
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1382.5 1079 68.2
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1381.3 1081 69.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1377.5 1076 67.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1377.5 960 74.9
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1376.7 1101 66.8
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1375.1 1068 68.4
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1375.1 1147 66.9
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1372.5 1083 67.4
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1371.3 1016 71.9
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1368.2 1076 67.8
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1365.5 1106 65.8
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1363.2 1085 67.2
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1361.3 1075 68.6
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1358.6 1184 63.8
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1358.2 1085 66.8
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1358.2 1083 68.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1357.8 1059 68.2
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1349.3 1086 66.6
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1341.6 1106 66.5
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1332.8 1002 70.8
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1319.7 1048 68.2
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1318.5 1078 65.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1313.1 1072 65.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1300.8 1081 66.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1282.3 1095 63.4
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1275.4 1047 65.3
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1270.4 1178 61.9
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1253.0 1080 62.3
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1252.3 1029 65.5
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1250.3 1081 62.1
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1244.2 1062 64.6
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1223.4 1083 59.8
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1223.0 1268 57.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1210.3 752 83.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1195.3 1029 62.8
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1174.8 831 72.8
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1169.5 1067 61.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.4e-310 1068.9 912 65.4
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 5.8e-309 1064.3 919 62.9
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 3.1e-302 1042.0 726 75.3
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 4.6e-290 1001.5 970 59.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.2e-284 982.6 796 68.7
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.7e-274 949.1 1094 48.8
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.4e-273 946.8 1100 49.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.2e-248 864.0 1078 47.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-247 860.5 645 71.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.3e-235 819.3 1054 45.2
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 7.5e-232 808.1 774 60.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.2e-230 802.7 1090 43.9
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 7.8e-221 771.5 569 72.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 3.6e-218 762.7 563 73.2
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.0e-217 759.2 563 70.7
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 7.6e-208 728.4 576 68.1
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.0e-204 718.0 844 52.6
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.4e-201 707.6 513 71.5
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 5.3e-185 652.5 720 53.1
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.7e-178 629.8 524 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.3e-172 610.5 823 44.5
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 5.7e-171 605.9 1241 33.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.6e-168 597.0 397 78.3
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.5e-150 537.3 373 75.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 2.1e-149 534.3 428 66.6
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.3e-134 482.6 406 64.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.7e-122 443.7 346 70.2
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 8.1e-117 426.0 346 66.2
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 4.4e-107 393.7 359 61.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.1e-101 374.8 366 59.3
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 6.2e-101 373.2 308 67.2
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.4e-97 362.1 360 54.2
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 5.6e-86 323.6 278 64.0
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 6.2e-85 320.1 269 65.1
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-84 319.3 197 83.8
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 6.9e-76 290.0 178 79.2
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 3.1e-68 264.6 175 76.0
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.4e-60 239.2 143 79.7
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.2e-57 226.9 162 72.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.3e-55 221.9 139 75.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 6.9e-52 210.3 129 81.4
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.0e-50 206.5 113 91.2
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 5.2e-47 194.1 129 69.8
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.2e-41 174.9 210 51.4
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.5e-38 166.0 178 53.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.3e-37 162.9 177 54.8
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.2e-37 160.2 85 89.4
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.2e-35 156.4 103 75.7
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 8.5e-34 150.2 84 82.1
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.1e-32 144.1 87 80.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 6.1e-32 144.1 104 68.3
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 8.8e-31 140.2 86 72.1
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-29 136.3 92 77.2
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.4e-28 132.9 201 35.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.8e-28 132.5 86 75.6
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-26 125.6 79 72.2
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.3e-26 125.6 79 72.2
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.8e-23 115.9 81 66.7
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.1e-20 104.8 83 65.1
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.6e-19 102.8 99 59.6
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 4.3e-17 94.7 84 61.9
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 4.3e-17 94.7 84 61.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.2e-16 93.2 59 78.0
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.1e-16 92.4 71 63.4
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.0e-16 90.5 62 74.2
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.0e-16 90.5 62 74.2
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.6e-14 85.5 49 85.7
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.2e-13 82.4 58 70.7
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 2.3e-10 72.4 53 67.9
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 1.5e-09 69.7 50 72.0
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.5e-09 69.7 48 68.8
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 6.2e-08 64.3 47 61.7
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.5e-06 59.7 38 71.1


User provided reference genes

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