Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.3e-52 209.5 111 100.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 3.5e-18 95.1 121 54.5
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.5e-16 89.0 108 52.8
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.3e-16 88.6 90 58.9
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.3e-15 86.7 108 51.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.8e-14 82.8 112 49.1
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.1e-14 81.6 107 53.3
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 4.1e-14 81.6 116 46.6
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 5.3e-14 81.3 86 55.8
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 9.0e-14 80.5 60 71.7
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.0e-13 79.3 56 71.4
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 3.4e-13 78.6 59 78.0
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 4.5e-13 78.2 68 69.1
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 4.5e-13 78.2 113 49.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.0e-12 77.0 54 75.9
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.3e-12 76.6 61 72.1
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.3e-12 76.6 107 51.4
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.9e-12 75.5 112 50.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.8e-12 75.1 107 50.5
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 5.0e-12 74.7 116 48.3
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 5.0e-12 74.7 111 48.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 5.0e-12 74.7 88 52.3
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 8.5e-12 73.9 58 74.1
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.1e-11 73.6 115 46.1
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.5e-11 72.4 113 47.8
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 4.2e-11 71.6 108 48.1
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 4.2e-11 71.6 112 45.5
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.1e-10 69.3 113 43.4
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.7e-10 68.9 95 48.4
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 3.6e-10 68.6 109 46.8
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 3.6e-10 68.6 97 49.5
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.6e-10 68.6 93 49.5
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 4.6e-10 68.2 61 65.6
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 6.1e-10 67.8 113 46.9
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 7.9e-10 67.4 97 41.2
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 7.9e-10 67.4 97 41.2
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 7.9e-10 67.4 97 41.2
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 7.9e-10 67.4 97 41.2
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.0e-09 67.0 116 42.2
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.0e-09 67.0 63 63.5
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.8e-09 66.2 94 48.9
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.3e-09 65.9 93 47.3
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 3.0e-09 65.5 115 45.2
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.0e-09 65.5 57 64.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 3.9e-09 65.1 90 46.7
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 3.9e-09 65.1 94 47.9
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.7e-09 64.3 94 51.1
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.7e-09 64.3 109 45.0
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 6.7e-09 64.3 77 53.2
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.1e-08 63.5 65 56.9
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.1e-08 63.5 62 53.2
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 1.5e-08 63.2 103 46.6
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.5e-08 62.4 110 40.0
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 3.3e-08 62.0 103 44.7
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 3.3e-08 62.0 55 65.5
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 3.3e-08 62.0 115 40.9
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 4.3e-08 61.6 37 78.4
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.3e-08 61.6 109 37.6
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 4.3e-08 61.6 54 64.8
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-08 60.8 54 64.8
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-08 60.8 54 64.8
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-08 60.8 54 64.8
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-08 60.8 54 64.8
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 9.7e-08 60.5 93 41.9
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 9.7e-08 60.5 109 37.6
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 9.7e-08 60.5 53 58.5
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 9.7e-08 60.5 72 55.6
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.7e-07 59.7 115 41.7
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.7e-07 59.7 66 59.1
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.7e-07 59.7 54 61.1
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.8e-07 58.9 41 65.9
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.8e-07 58.9 79 51.9
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 3.7e-07 58.5 112 36.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.7e-07 58.5 73 50.7
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 4.8e-07 58.2 69 44.9
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 4.8e-07 58.2 117 40.2
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 4.8e-07 58.2 61 57.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 6.3e-07 57.8 64 50.0
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 6.3e-07 57.8 64 50.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.1e-06 57.0 56 53.6
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.1e-06 57.0 56 51.8
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.1e-06 57.0 56 53.6
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.1e-06 57.0 105 41.0
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.4e-06 56.6 96 35.4
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.4e-06 56.6 110 43.6
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.8e-06 56.2 85 42.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.4e-06 55.8 76 50.0
Prupe.5G082400 Prunus persica HOM05D005851 ORTHO05D007137 4.1e-06 55.1 112 43.8
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 6.9e-06 54.3 31 77.4
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 9.1e-06 53.9 49 59.2
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 9.1e-06 53.9 110 38.2


User provided reference genes

Program Settings