Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 8.1e-200 700.3 374 100.0
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 7.5e-121 438.0 377 64.5
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 9.2e-119 431.0 377 63.9
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.6e-118 430.3 380 63.4
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 7.8e-118 427.9 377 61.5
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 3.9e-117 425.6 377 60.7
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 5.6e-116 421.8 377 60.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 4.7e-115 418.7 378 60.6
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.0e-114 415.6 377 59.7
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 5.2e-114 415.2 377 61.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.5e-113 413.7 379 61.5
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 5.8e-113 411.8 376 56.9
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.5e-113 411.4 377 59.2
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.9e-112 409.5 378 59.5
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 3.7e-112 409.1 378 59.0
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.4e-112 408.3 383 61.6
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 6.4e-112 408.3 381 59.8
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.9e-111 406.8 377 59.7
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 2.4e-111 406.4 381 59.8
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 9.2e-111 404.4 381 58.5
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 1.6e-110 403.7 378 58.7
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.0e-109 401.0 379 58.3
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 1.7e-109 400.2 375 58.1
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.3e-109 399.8 377 59.9
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 8.6e-109 397.9 401 55.1
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.1e-108 397.5 376 55.9
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.9e-108 396.7 376 56.1
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.9e-108 396.7 414 54.3
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 5.6e-108 395.2 379 57.8
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 9.5e-108 394.4 376 55.9
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 4.7e-107 392.1 382 61.0
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 4.7e-107 392.1 377 58.1
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 6.2e-107 391.7 376 57.7
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 8.1e-107 391.3 377 57.6
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 8.1e-107 391.3 377 57.0
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.8e-106 390.2 376 57.2
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 8.9e-106 387.9 377 57.8
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 8.9e-106 387.9 376 56.6
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 2.0e-105 386.7 379 56.7
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 2.6e-105 386.3 383 56.4
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 3.4e-105 386.0 381 55.6
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 5.8e-105 385.2 376 56.1
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 9.9e-105 384.4 377 55.2
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.2e-104 383.3 375 56.0
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 2.2e-104 383.3 378 56.6
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 2.9e-104 382.9 379 55.9
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 4.9e-104 382.1 376 55.6
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 4.9e-104 382.1 376 57.7
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 6.4e-104 381.7 410 54.1
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-103 380.9 375 56.3
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.1e-103 380.9 415 52.8
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.9e-103 380.2 379 57.3
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 2.4e-103 379.8 378 56.1
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.1e-103 379.0 379 57.0
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 4.1e-103 379.0 378 57.7
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 5.4e-103 378.6 376 56.9
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.2e-102 377.5 387 55.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.6e-102 377.1 385 60.0
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.6e-102 377.1 379 56.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.1e-102 376.7 376 55.9
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.7e-102 376.3 376 56.9
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 3.5e-102 375.9 376 56.9
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 3.5e-102 375.9 416 52.4
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.6e-102 375.6 376 56.6
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 7.8e-102 374.8 375 56.5
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 2.3e-101 373.2 378 55.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 3.9e-101 372.5 378 54.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-100 370.5 378 56.3
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.2e-99 365.2 380 54.7
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 8.1e-99 364.8 388 54.4
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.4e-97 359.4 376 54.5
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.7e-96 357.1 380 53.9
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 7.1e-95 351.7 404 51.0
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 9.2e-95 351.3 386 51.8
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.2e-94 350.9 378 53.4
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.1e-94 350.1 392 52.3
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.5e-92 344.0 392 53.3
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.5e-92 344.0 374 53.2
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 4.3e-92 342.4 392 51.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 2.1e-91 340.1 393 50.9
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.8e-91 339.7 398 50.5
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 8.1e-91 338.2 402 49.3
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 8.1e-91 338.2 362 52.5
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 2.4e-90 336.7 401 50.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 9.0e-90 334.7 393 50.6
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-89 334.0 377 53.3
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.6e-89 333.2 393 49.6
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 7.6e-89 331.6 397 49.6
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 9.9e-89 331.3 407 52.1
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 2.2e-88 330.1 403 49.9
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 6.4e-88 328.6 413 48.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.4e-87 327.4 367 53.1
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 3.2e-87 326.2 375 49.9
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.7e-86 323.2 411 47.9
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.7e-85 320.5 409 51.8
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.7e-85 320.5 409 51.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 5.1e-85 318.9 410 49.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.9e-84 317.0 414 47.8
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.5e-84 316.6 413 47.5
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 7.3e-84 315.1 393 47.3
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.3e-83 314.3 397 47.9
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 6.2e-83 312.0 415 46.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.8e-82 310.5 421 46.8
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.2e-81 307.8 377 52.8
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 4.5e-81 305.8 419 47.0
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.1e-79 301.2 334 53.9
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.8e-77 293.9 410 44.6
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 4.3e-76 289.3 379 46.2
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 5.6e-76 288.9 439 42.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.2e-73 281.2 335 50.4
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.2e-72 276.9 376 46.0
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 8.4e-64 248.4 309 47.2
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 3.9e-53 213.0 213 57.3
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 3.9e-53 213.0 213 57.3
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 3.9e-53 213.0 213 57.3
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 3.7e-51 206.5 277 45.8
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.2e-46 191.4 412 37.6
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.4e-45 188.0 351 36.8
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 2.4e-42 177.2 484 34.1
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.0e-37 161.8 300 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.8e-34 151.0 544 28.1
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.5e-33 146.7 383 35.0
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 4.5e-33 146.4 172 50.6
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.2e-31 140.2 150 55.3
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 5.5e-31 139.4 404 34.9
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 9.4e-31 138.7 193 45.1
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 2.1e-30 137.5 150 62.0
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.2e-23 113.6 151 47.0
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.5e-20 104.8 202 37.6
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 5.4e-18 96.3 105 51.4
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 3.8e-16 90.1 314 33.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 2.3e-13 80.9 380 30.8
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.3e-13 80.9 380 30.8
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.4e-10 70.9 147 34.0
DCAR_031559 Daucus carota HOM05D037052 ORTHO05D177761 3.6e-06 57.0 37 73.0


User provided reference genes

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