Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 2.1e-35 151.8 74 100.0
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 3.9e-21 104.4 59 84.7
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.5e-20 102.4 62 79.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 2.5e-20 101.7 64 76.6
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 3.3e-20 101.3 64 73.4
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.3e-20 101.3 64 78.1
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.3e-20 101.3 64 78.1
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 7.3e-20 100.1 64 75.0
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 7.3e-20 100.1 64 75.0
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.6e-19 99.0 64 75.0
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 2.1e-19 98.6 64 75.0
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 2.1e-19 98.6 64 75.0
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 2.8e-19 98.2 65 73.8
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 2.8e-19 98.2 62 74.2
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 6.2e-19 97.1 60 76.7
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 6.2e-19 97.1 66 75.8
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 8.1e-19 96.7 59 78.0
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 8.1e-19 96.7 64 76.6
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.4e-18 95.9 59 76.3
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.8e-18 95.5 64 70.3
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.8e-18 95.5 64 73.4
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.8e-18 95.5 64 73.4
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.8e-18 95.5 66 74.2
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.4e-18 95.1 64 70.3
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 4.0e-18 94.4 60 76.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.0e-18 94.4 64 71.9
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 4.0e-18 94.4 64 73.4
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 5.3e-18 94.0 65 70.8
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 6.9e-18 93.6 59 79.7
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 6.9e-18 93.6 64 71.9
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 9.0e-18 93.2 62 71.0
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 9.0e-18 93.2 60 76.7
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.2e-17 92.8 61 73.8
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.0e-17 92.0 64 70.3
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.0e-17 92.0 64 68.8
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.0e-17 92.0 64 68.8
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 2.6e-17 91.7 64 71.9
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 3.4e-17 91.3 61 72.1
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 4.5e-17 90.9 64 70.3
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.8e-17 90.5 58 72.4
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 5.8e-17 90.5 64 71.9
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 9.9e-17 89.7 59 74.6
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.3e-16 89.4 60 70.0
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 1.7e-16 89.0 58 72.4
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.7e-16 89.0 64 67.2
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.2e-16 88.6 61 72.1
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 2.2e-16 88.6 57 71.9
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 2.2e-16 88.6 53 83.0
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-16 88.6 65 67.7
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-16 88.6 65 67.7
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.2e-16 88.6 64 70.3
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 2.9e-16 88.2 59 74.6
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 3.8e-16 87.8 61 72.1
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 3.8e-16 87.8 60 71.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 4.9e-16 87.4 59 72.9
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 4.9e-16 87.4 59 72.9
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 6.4e-16 87.0 59 72.9
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 6.4e-16 87.0 64 68.8
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 6.4e-16 87.0 45 91.1
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.4e-16 86.7 65 66.2
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 8.4e-16 86.7 61 70.5
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 8.4e-16 86.7 58 72.4
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.1e-15 86.3 65 66.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.1e-15 86.3 63 68.3
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 1.1e-15 86.3 59 72.9
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 1.4e-15 85.9 60 71.7
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.4e-15 85.9 46 87.0
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.4e-15 85.9 65 66.2
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.9e-15 85.5 60 66.7
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 2.4e-15 85.1 48 89.6
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 3.2e-15 84.7 60 73.3
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.2e-15 84.7 48 81.2
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 4.2e-15 84.3 49 81.6
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 4.2e-15 84.3 50 82.0
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 4.2e-15 84.3 64 65.6
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 4.2e-15 84.3 64 68.8
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 5.4e-15 84.0 64 65.6
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 7.1e-15 83.6 58 69.0
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 9.3e-15 83.2 45 88.9
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 1.2e-14 82.8 61 68.9
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.2e-14 82.8 46 82.6
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 1.6e-14 82.4 44 88.6
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 1.6e-14 82.4 44 88.6
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.6e-14 82.4 44 88.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.6e-14 82.4 64 70.3
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.6e-14 82.4 59 71.2
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 1.6e-14 82.4 59 71.2
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.6e-14 82.4 56 73.2
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 2.1e-14 82.0 43 90.7
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 2.1e-14 82.0 43 90.7
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 2.7e-14 81.6 59 69.5
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 2.7e-14 81.6 58 72.4
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.5e-14 81.3 60 63.3
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 4.6e-14 80.9 51 76.5
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.6e-14 80.9 64 62.5
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 6.0e-14 80.5 61 68.9
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 6.0e-14 80.5 61 68.9
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 6.0e-14 80.5 61 68.9
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 7.9e-14 80.1 45 82.2
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 7.9e-14 80.1 60 66.7
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.0e-13 79.7 60 68.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.3e-13 79.3 44 84.1
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 6.7e-13 77.0 47 78.7
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 6.7e-13 77.0 47 78.7
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 5.6e-12 73.9 59 62.7
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-11 72.4 61 65.6
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.8e-11 71.6 60 58.3
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 8.1e-11 70.1 47 68.1
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.2e-09 66.2 39 79.5
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 3.2e-07 58.2 39 69.2


User provided reference genes

Program Settings