Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1434.9 704 100.0
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 732 86.5
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 732 85.8
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 730 85.6
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 730 85.6
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 732 85.2
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 730 84.2
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 732 84.8
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 732 83.2
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1268.1 732 84.7
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 730 84.5
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 730 83.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 730 84.1
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 730 83.8
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 733 83.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1258.8 732 83.9
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1257.3 730 83.8
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1256.9 733 84.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1256.1 734 83.9
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 732 83.5
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1254.2 734 83.0
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1253.4 732 83.3
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 724 84.4
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 733 83.5
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1250.0 730 83.6
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1249.2 730 82.7
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1246.1 746 82.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1245.7 734 82.4
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1245.0 734 83.2
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1242.3 732 82.5
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 733 82.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 733 82.4
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1240.7 732 82.1
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1240.7 730 81.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1240.3 774 79.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 730 81.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 730 81.6
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 733 82.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 732 81.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 732 83.1
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 733 82.8
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 732 81.3
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 733 83.2
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 732 81.4
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 733 82.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 732 82.8
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 732 82.5
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1234.2 734 81.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1233.4 735 81.0
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 734 81.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 782 78.6
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 779 78.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1233.0 779 78.4
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1232.6 775 78.7
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 749 81.7
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1231.5 734 82.2
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 731 81.3
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 732 82.1
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 732 80.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 732 82.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1225.7 696 85.1
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 733 81.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1218.0 732 80.9
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 733 81.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1215.7 735 80.5
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1213.4 732 80.1
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1210.3 733 80.6
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 732 80.2
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1207.6 732 80.5
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1207.6 734 80.2
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 732 79.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 732 80.5
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 732 79.9
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 732 80.1
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 732 80.5
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 730 80.3
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 732 80.3
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 732 80.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1203.7 734 80.0
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1202.6 732 79.9
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 732 80.1
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 732 79.8
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 724 80.5
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 734 79.7
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1200.7 734 79.8
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1199.9 732 79.5
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 732 80.2
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1198.7 730 79.3
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 732 79.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 732 79.8
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1194.5 735 78.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1183.7 830 72.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1180.2 730 80.4
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1176.4 730 78.6
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1164.4 744 77.6
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1164.1 744 77.6
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1159.8 743 77.3
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1158.7 733 76.8
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1158.3 732 79.0
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1155.2 733 76.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1155.2 730 78.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1153.3 663 84.0
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1152.1 698 79.2
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1150.2 748 75.4
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1146.0 727 76.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1143.6 733 77.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1132.5 735 76.1
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1119.4 659 82.1
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1107.8 720 74.4
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1103.6 667 81.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1088.6 741 71.7
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1081.6 696 75.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1079.3 731 72.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1077.0 707 72.8
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.4e-311 1072.4 616 85.9
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 4.8e-310 1067.4 616 84.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.8e-309 1065.4 722 74.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 7.6e-308 1060.1 734 70.6
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 2.0e-300 1035.4 585 86.5
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 3.9e-296 1021.1 734 68.7
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.5e-292 1009.2 706 69.8
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.1e-290 1003.0 732 69.4
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.0e-280 969.9 675 71.6
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.4e-269 932.9 736 63.3
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.1e-265 919.1 733 61.9
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.6e-263 912.1 713 62.1
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.1e-257 892.5 504 87.1
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 2.0e-252 875.9 567 76.0
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.2e-241 840.1 669 62.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 4.4e-239 831.6 690 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.2e-238 829.3 619 65.4
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.7e-236 822.4 691 59.0
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 7.8e-220 767.7 702 55.0
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 8.3e-214 747.7 783 51.1
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.4e-213 746.9 502 74.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 6.9e-200 701.4 417 83.2
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 9.6e-194 681.0 705 50.6
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.0e-166 589.0 422 69.9
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 4.5e-151 539.3 303 87.5
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.8e-147 527.3 315 80.3
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.9e-147 526.2 311 84.2
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.5e-142 508.4 357 70.3
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 3.4e-138 496.5 349 75.6
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 7.5e-138 495.4 377 65.0
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.7e-124 449.5 338 66.3
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.5e-111 406.8 280 70.7
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.5e-111 406.8 314 65.6
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.1e-88 329.3 209 74.2
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 4.3e-85 320.1 718 34.3
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 9.9e-74 282.3 352 49.1
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-73 281.2 221 65.2
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.8e-73 280.4 183 70.5
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.4e-67 261.9 213 62.0
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-67 260.4 204 66.2
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.7e-54 216.5 168 62.5
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 2.9e-49 201.1 209 55.0
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.4e-48 198.7 191 49.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 3.6e-47 194.1 207 54.1
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-33 148.3 81 79.0
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-33 147.1 80 81.2
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-32 146.0 80 80.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 8.0e-31 139.8 138 51.4
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 4.1e-27 127.5 161 49.1
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 9.4e-24 116.3 187 39.0
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.2e-23 115.9 126 50.8
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.1e-23 115.2 187 38.5
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.5e-21 106.7 63 71.4
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.1e-19 102.8 60 81.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 7.0e-19 100.1 130 50.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 3.5e-18 97.8 110 52.7
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-18 97.1 54 77.8
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.0e-17 96.3 111 47.7
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 6.8e-14 83.6 74 58.1
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 8.8e-14 83.2 73 58.9
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 1.8e-11 75.5 50 76.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 1.3e-09 69.3 45 80.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 5.6e-08 63.9 46 76.1
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.8e-07 61.6 34 85.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 3.6e-07 61.2 40 70.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 6.8e-06 57.0 38 76.3


User provided reference genes

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