Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C144T5 Lonicera japonica HOM05D000290 ORTHO05D004630 5.9e-85 317.4 149 100.0
Lj9C475G6 Lonicera japonica HOM05D000290 ORTHO05D004630 5.2e-49 198.0 141 73.8
Hma1.2p1_0046F.1_g027510 Hydrangea macrophylla HOM05D000290 ORTHO05D004630 7.5e-40 167.5 141 62.4
Lj5C100G2 Lonicera japonica HOM05D000290 ORTHO05D004630 6.4e-39 164.5 136 61.8
CiPaw.11G011800 Carya illinoinensis HOM05D000290 ORTHO05D004630 8.3e-39 164.1 121 66.1
GSVIVG01007537001 Vitis vinifera HOM05D000290 ORTHO05D004630 2.4e-38 162.5 121 66.1
Manes.14G055200 Manihot esculenta HOM05D000290 ORTHO05D004630 3.2e-38 162.2 125 67.2
Potri.015G091000 Populus trichocarpa HOM05D000290 ORTHO05D004630 3.2e-38 162.2 140 62.9
QL10p005012 Quercus lobata HOM05D000290 ORTHO05D004630 4.1e-38 161.8 142 59.2
CSS0024917 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 5.4e-38 161.4 125 67.2
Lsat_1_v5_gn_1_29520 Lactuca sativa HOM05D000290 ORTHO05D004630 5.4e-38 161.4 138 60.9
PGSC0003DMG400024209 Solanum tuberosum HOM05D000290 ORTHO05D004630 2.1e-37 159.5 117 69.2
Nitab4.5_0000366g0080 Nicotiana tabacum HOM05D000290 ORTHO05D004630 4.6e-37 158.3 121 66.1
Nitab4.5_0006219g0020 Nicotiana tabacum HOM05D000290 ORTHO05D004630 6.0e-37 157.9 121 66.1
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 6.0e-37 157.9 140 60.0
Solyc07g009150.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 6.0e-37 157.9 117 69.2
Sopen07g017140 Solanum pennellii HOM05D000290 ORTHO05D004630 6.0e-37 157.9 117 69.2
BcaB03g12448 Brassica carinata HOM05D000290 ORTHO05D004630 7.8e-37 157.5 143 57.3
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 7.8e-37 157.5 121 62.8
Ciclev10020267m.g Citrus clementina HOM05D000290 ORTHO05D004630 1.0e-36 157.1 143 58.0
Sp7g22800 Schrenkiella parvula HOM05D000290 ORTHO05D004630 1.0e-36 157.1 143 58.0
BcaC07g38154 Brassica carinata HOM05D000290 ORTHO05D004630 1.7e-36 156.4 143 57.3
BraA08t34086Z Brassica rapa HOM05D000290 ORTHO05D004630 1.7e-36 156.4 143 57.3
MELO3C002336.2 Cucumis melo HOM05D000290 ORTHO05D004630 3.0e-36 155.6 144 58.3
CsaV3_1G009330 Cucumis sativus L. HOM05D000290 ORTHO05D004630 3.0e-36 155.6 142 58.5
Actinidia25610 Actinidia chinensis HOM05D000290 ORTHO05D004630 3.9e-36 155.2 126 65.1
Thhalv10027088m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 3.9e-36 155.2 143 57.3
Potri.012G093600 Populus trichocarpa HOM05D000290 ORTHO05D004630 3.9e-36 155.2 140 60.7
Peaxi162Scf00324g00333 Petunia axillaris HOM05D000290 ORTHO05D004630 5.1e-36 154.8 121 65.3
Thecc.03G123200 Theobroma cacao HOM05D000290 ORTHO05D004630 5.1e-36 154.8 123 65.0
CSS0022906 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 6.6e-36 154.5 125 63.2
Duzib084G0271 Durio zibethinus HOM05D000290 ORTHO05D004630 6.6e-36 154.5 138 59.4
Oeu011574.1 Olea europaea HOM05D000290 ORTHO05D004630 8.6e-36 154.1 125 62.4
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 8.6e-36 154.1 124 62.9
CANSAT80G1334 Cannabis sativa HOM05D000290 ORTHO05D004630 1.1e-35 153.7 125 60.8
CAN.G352.56 Capsicum annuum HOM05D000290 ORTHO05D004630 1.1e-35 153.7 121 62.8
COL.COLO4_03516 Corchorus olitorius HOM05D000290 ORTHO05D004630 1.1e-35 153.7 117 65.8
Gorai.006G270500 Gossypium raimondii HOM05D000290 ORTHO05D004630 1.1e-35 153.7 117 65.8
MD17G1259300 Malus domestica HOM05D000290 ORTHO05D004630 1.1e-35 153.7 125 61.6
CARHR232200 Cardamine hirsuta HOM05D000290 ORTHO05D004630 1.5e-35 153.3 141 56.7
Cc04_g10280 Coffea canephora HOM05D000290 ORTHO05D004630 1.5e-35 153.3 138 57.2
HanXRQChr02g0035151 Helianthus annuus HOM05D000290 ORTHO05D004630 1.5e-35 153.3 139 57.6
Gohir.A09G245100 Gossypium hirsutum HOM05D000290 ORTHO05D004630 1.9e-35 152.9 117 65.8
Solyc03g110940.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 1.9e-35 152.9 121 62.0
Gohir.D09G246000 Gossypium hirsutum HOM05D000290 ORTHO05D004630 2.5e-35 152.5 117 65.8
Lalb_Chr12g0202101 Lupinus albus HOM05D000290 ORTHO05D004630 2.5e-35 152.5 125 60.8
Gorai.001G061200 Gossypium raimondii HOM05D000290 ORTHO05D004630 4.3e-35 151.8 121 63.6
HanXRQChr09g0272881 Helianthus annuus HOM05D000290 ORTHO05D004630 4.3e-35 151.8 125 64.0
SalBow5G1105 Salvia bowleyana HOM05D000290 ORTHO05D004630 4.3e-35 151.8 125 61.6
ECA247G0104 Erigeron canadensis HOM05D000290 ORTHO05D004630 7.3e-35 151.0 139 56.8
Gohir.D07G057700 Gossypium hirsutum HOM05D000290 ORTHO05D004630 7.3e-35 151.0 121 63.6
RcHm_v2.0_Chr7g0190911 Rosa chinensis HOM05D000290 ORTHO05D004630 7.3e-35 151.0 125 59.2
unitig_0.g2230 Utricularia gibba HOM05D000290 ORTHO05D004630 7.3e-35 151.0 121 64.5
Nn4g22452 Nelumbo nucifera HOM05D000290 ORTHO05D004630 9.5e-35 150.6 140 56.4
Sopen03g030130 Solanum pennellii HOM05D000290 ORTHO05D004630 9.5e-35 150.6 121 61.2
THA.LOC104811604 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 9.5e-35 150.6 142 56.3
AL8G24390 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 1.6e-34 149.8 143 54.5
Eucgr.K02755 Eucalyptus grandis HOM05D000290 ORTHO05D004630 1.6e-34 149.8 125 60.0
FvH4_5g07580 Fragaria vesca HOM05D000290 ORTHO05D004630 1.6e-34 149.8 125 58.4
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.6e-34 149.8 125 58.4
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.1e-34 149.4 125 58.4
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 2.1e-34 149.4 125 58.4
Carub.0008s1037 Capsella rubella HOM05D000290 ORTHO05D004630 3.6e-34 148.7 143 53.8
DCAR_026210 Daucus carota HOM05D000290 ORTHO05D004630 3.6e-34 148.7 124 60.5
FAN13G0034 Fragaria x ananassa HOM05D000290 ORTHO05D004630 3.6e-34 148.7 125 57.6
Prupe.5G156400 Prunus persica HOM05D000290 ORTHO05D004630 3.6e-34 148.7 125 60.0
Migut.I00478 Erythranthe guttata HOM05D000290 ORTHO05D004630 4.7e-34 148.3 141 54.6
Thhalv10013416m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 4.7e-34 148.3 125 58.4
SGA_v2.0_scaffold161G37824 Striga asiatica HOM05D000290 ORTHO05D004630 8.1e-34 147.5 122 60.7
TAR446G0003 Trochodendron aralioides HOM05D000290 ORTHO05D004630 8.1e-34 147.5 119 60.5
AL7G28370 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 1.1e-33 147.1 141 54.6
Lsat_1_v5_gn_4_78801 Lactuca sativa HOM05D000290 ORTHO05D004630 1.1e-33 147.1 125 59.2
Aa31LG3G5900 Aethionema arabicum HOM05D000290 ORTHO05D004630 1.4e-33 146.7 143 53.8
AT5G50330 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 1.4e-33 146.7 143 53.8
Cpa.g.sc4.75 Carica papaya HOM05D000290 ORTHO05D004630 2.4e-33 146.0 121 61.2
BcaB08g35409 Brassica carinata HOM05D000290 ORTHO05D004630 3.1e-33 145.6 143 54.5
Glyma.17G127200 Glycine max HOM05D000290 ORTHO05D004630 3.1e-33 145.6 123 58.5
EL10Ac7g18083 Beta vulgaris HOM05D000290 ORTHO05D004630 5.2e-33 144.8 140 54.3
A10p08400 Brassica napus HOM05D000290 ORTHO05D004630 5.2e-33 144.8 143 54.5
BcaC04g20804 Brassica carinata HOM05D000290 ORTHO05D004630 6.8e-33 144.4 143 54.5
C09p38980 Brassica napus HOM05D000290 ORTHO05D004630 6.8e-33 144.4 143 54.5
BolC9t56778H Brassica oleracea HOM05D000290 ORTHO05D004630 6.8e-33 144.4 143 54.5
BraSC37t46165Z Brassica rapa HOM05D000290 ORTHO05D004630 6.8e-33 144.4 143 54.5
CARHR258180 Cardamine hirsuta HOM05D000290 ORTHO05D004630 6.8e-33 144.4 143 53.1
Glyma.05G045000 Glycine max HOM05D000290 ORTHO05D004630 8.9e-33 144.1 123 57.7
THA.LOC104825002 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 8.9e-33 144.1 125 58.4
MSTRG.4588 Avicennia marina HOM05D000290 ORTHO05D004630 1.2e-32 143.7 120 60.0
AUR62025716 Chenopodium quinoa HOM05D000290 ORTHO05D004630 1.2e-32 143.7 141 52.5
AL664U10010 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 1.5e-32 143.3 143 52.4
arahy.Tifrunner.gnm1.ann1.RWP7TH Arachis hypogaea HOM05D000290 ORTHO05D004630 1.5e-32 143.3 124 57.3
arahy.Tifrunner.gnm1.ann1.JHQ7C4 Arachis hypogaea HOM05D000290 ORTHO05D004630 3.4e-32 142.1 124 56.5
Hund18540 Selenicereus undatus HOM05D000290 ORTHO05D004630 3.4e-32 142.1 146 54.1
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 3.4e-32 142.1 119 58.8
PSO017G4570 Papaver somniferum HOM05D000290 ORTHO05D004630 4.4e-32 141.7 124 57.3
PSO478G4646 Papaver somniferum HOM05D000290 ORTHO05D004630 4.4e-32 141.7 124 57.3
Phvul.003G208300 Phaseolus vulgaris HOM05D000290 ORTHO05D004630 4.4e-32 141.7 119 58.0
Ca_05562_v3 Cicer arietinum L. HOM05D000290 ORTHO05D004630 5.8e-32 141.4 111 64.0
MD06G1149200 Malus domestica HOM05D000290 ORTHO05D004630 5.8e-32 141.4 125 56.8
arahy.Tifrunner.gnm1.ann1.W1RGJC Arachis hypogaea HOM05D000290 ORTHO05D004630 1.3e-31 140.2 122 59.0
Lj4g0027510 Lotus japonicus HOM05D000290 ORTHO05D004630 1.3e-31 140.2 117 59.8
Gohir.A07G053300 Gossypium hirsutum HOM05D000290 ORTHO05D004630 1.7e-31 139.8 121 57.9
arahy.Tifrunner.gnm1.ann1.KT2U2T Arachis hypogaea HOM05D000290 ORTHO05D004630 3.8e-31 138.7 122 57.4
Medtr4g104070 Medicago truncatula HOM05D000290 ORTHO05D004630 2.4e-30 136.0 117 59.8
Psat4g064920 Pisum sativum HOM05D000290 ORTHO05D004630 3.2e-30 135.6 116 60.3
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 4.1e-30 135.2 111 62.2
CDE09G0950 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 9.2e-30 134.0 119 56.3
CDE02G0588 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 3.5e-29 132.1 119 54.6
Aa31LG7G11030 Aethionema arabicum HOM05D000290 ORTHO05D004630 6.0e-29 131.3 120 55.8
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.3e-28 130.2 121 57.9
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 2.3e-28 129.4 121 57.0
Aqoxy3G01431 Aquilegia oxysepala HOM05D000290 ORTHO05D004630 3.0e-28 129.0 116 56.9
Zm00001eb144330 Zea mays HOM05D000290 ORTHO05D004630 1.9e-27 126.3 116 54.3
HPP92_002024 Vanilla planifolia HOM05D000290 ORTHO05D004630 2.5e-27 125.9 138 51.4
Os01g0904200 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D004630 4.3e-27 125.2 115 53.9
Zm00001eb365530 Zea mays HOM05D000290 ORTHO05D004630 7.3e-27 124.4 116 53.4
ATR0824G143 Amborella trichopoda HOM05D000290 ORTHO05D004630 1.6e-26 123.2 125 51.2
Peaxi162Scf00089g00238 Petunia axillaris HOM05D000290 ORTHO05D004630 5.2e-25 118.2 121 52.1
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 9.3e-22 107.5 105 58.1
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 3.5e-21 105.5 112 54.5
Atru.chr9.1016 Acer truncatum HOM05D000290 ORTHO05D004630 3.9e-20 102.1 88 62.5
Nitab4.5_0005418g0070 Nicotiana tabacum HOM05D000290 ORTHO05D004630 6.6e-20 101.3 121 48.8
TPR.G37534 Trifolium pratense HOM05D000290 ORTHO05D004630 1.9e-19 99.8 71 64.8
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 3.3e-19 99.0 105 55.2
Sc04g0000940 Simmondsia chinensis HOM05D000290 ORTHO05D004630 3.3e-19 99.0 72 59.7
Carub.0007s1624 Capsella rubella HOM05D000290 ORTHO05D004630 3.6e-18 95.5 103 52.4
Sp6g12410 Schrenkiella parvula HOM05D000290 ORTHO05D004630 4.8e-18 95.1 105 50.5
Gorai.002G133100 Gossypium raimondii HOM05D000290 ORTHO05D004630 6.2e-18 94.7 110 47.3
AUR62001286 Chenopodium quinoa HOM05D000290 ORTHO05D004630 3.1e-17 92.4 104 50.0
SMO356G0040 Selaginella moellendorffii HOM05D000290 ORTHO05D004630 6.9e-17 91.3 104 45.2
AT4G24810 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 3.4e-16 89.0 98 50.0
Pp3c13_11180 Physcomitrium patens HOM05D000290 ORTHO05D004630 2.2e-15 86.3 108 42.6
CBR_g8367 Chara braunii HOM05D000290 ORTHO05D004630 6.4e-15 84.7 104 42.3
Sabra12G0068200 Salix brachista HOM05D000290 ORTHO05D004630 6.4e-15 84.7 113 47.8
AagrBONN_evm.TU.Sc2ySwM_117.3717 Anthoceros agrestis HOM05D000290 ORTHO05D004630 1.1e-14 84.0 108 41.7
Nitab4.5_0010637g0030 Nicotiana tabacum HOM05D000290 ORTHO05D004630 1.4e-14 83.6 121 41.3
TAR374G0669 Trochodendron aralioides HOM05D000290 ORTHO05D004630 1.4e-14 83.6 75 56.0
SEGI_07631 Sequoiadendron giganteum HOM05D000290 ORTHO05D004630 1.9e-14 83.2 64 54.7
Dinv38466 Davidia involucrata HOM05D000290 ORTHO05D004630 9.3e-14 80.9 70 61.4
Hund05650 Selenicereus undatus HOM05D000290 ORTHO05D004630 2.1e-13 79.7 142 34.5
vmacro19237 Vaccinium macrocarpon HOM05D000290 ORTHO05D004630 2.1e-13 79.7 70 58.6
CSS0007069 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 9.6e-11 70.9 73 47.9
CSS0021532 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 2.8e-10 69.3 120 38.3
CSS0018944 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 2.6e-08 62.8 71 52.1
PGR044G2145 Punica granatum HOM05D000290 ORTHO05D004630 2.9e-07 59.3 34 79.4
BcaC01g00609 Brassica carinata HOM05D013989 ORTHO05D004630 8.4e-07 57.8 39 64.1
BcaC01g04676 Brassica carinata HOM05D013989 ORTHO05D004630 8.4e-07 57.8 39 64.1
BcaC05g27683 Brassica carinata HOM05D013989 ORTHO05D004630 8.4e-07 57.8 39 64.1
BcaC02g07949 Brassica carinata HOM05D013989 ORTHO05D004630 4.2e-06 55.5 39 61.5
BcaC04g21462 Brassica carinata HOM05D013989 ORTHO05D004630 4.2e-06 55.5 39 61.5
BcaC04g22438 Brassica carinata HOM05D013989 ORTHO05D004630 4.2e-06 55.5 39 61.5
BcaC04g22439 Brassica carinata HOM05D013989 ORTHO05D004630 4.2e-06 55.5 39 61.5
Gohir.D01G108900 Gossypium hirsutum HOM05D000290 ORTHO05D004630 7.1e-06 54.7 30 76.7
VMungo1383G0016 Vigna mungo HOM05D002225 ORTHO05D002271 9.3e-06 54.3 35 68.6


User provided reference genes

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