Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 0.0e+00 1833.9 955 100.0
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 9.1e-272 940.6 1053 50.7
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.0e-235 818.9 1051 48.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 6.2e-228 795.0 1062 45.0
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 6.2e-228 795.0 1047 44.5
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.1e-224 782.3 1058 47.1
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 1.5e-218 763.8 1069 43.7
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-216 757.7 1092 42.5
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 6.6e-214 748.4 1194 41.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.1e-212 743.4 1204 42.5
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 4.0e-211 739.2 1033 43.3
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 2.0e-210 736.9 1007 44.1
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 3.8e-209 732.6 1038 42.9
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 7.9e-207 724.9 1059 41.9
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.1e-199 700.3 999 43.0
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 4.6e-199 699.1 1048 40.9
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 6.0e-199 698.7 1101 40.0
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 5.6e-197 692.2 1015 42.8
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 2.4e-195 686.8 1050 41.3
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.1e-195 686.4 1014 41.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.5e-194 684.1 999 43.4
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 2.9e-193 679.9 1089 38.6
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 4.9e-193 679.1 1012 40.4
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 7.1e-192 675.2 1130 39.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 9.3e-192 674.9 1030 41.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 9.3e-192 674.9 1023 39.0
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.2e-191 674.5 1091 40.3
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 6.7e-190 668.7 1046 38.7
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.1e-189 667.9 1078 41.3
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.5e-189 667.5 1017 41.2
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.9e-189 667.2 1047 38.7
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 7.4e-189 665.2 965 41.6
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 2.8e-188 663.3 1125 37.8
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 8.2e-188 661.8 1079 41.0
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.8e-187 660.6 1019 39.9
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.1e-187 659.8 1070 39.5
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.1e-187 659.8 1070 39.5
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 2.2e-185 653.7 893 43.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.2e-185 653.7 1189 37.0
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.2e-184 649.4 1076 40.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 3.6e-183 646.4 1056 38.4
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.1e-183 645.6 1125 39.6
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.7e-180 636.3 1119 36.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 4.8e-180 636.0 1003 39.8
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.1e-179 633.3 1075 38.1
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 8.5e-177 625.2 1030 39.2
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-176 624.0 1114 38.5
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.2e-175 621.3 1024 41.8
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.7e-173 612.5 891 44.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.3e-172 611.3 999 38.7
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.7e-172 610.9 1009 37.1
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 2.8e-172 610.1 1046 38.3
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.8e-172 610.1 992 38.6
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.4e-171 607.8 1038 38.5
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 3.1e-171 606.7 1025 36.6
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 4.5e-170 602.8 1042 36.9
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 3.8e-169 599.7 1053 38.2
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.5e-168 597.0 1038 37.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 4.2e-168 596.3 1019 37.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 9.4e-168 595.1 1043 37.2
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 1.2e-167 594.7 1058 37.3
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 2.1e-167 594.0 977 39.5
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 7.9e-167 592.0 1072 36.6
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 3.9e-166 589.7 1007 37.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.9e-166 589.7 1009 38.7
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 5.2e-166 589.3 1004 37.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 5.2e-166 589.3 1015 36.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 8.8e-166 588.6 1077 36.6
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.5e-165 587.8 1007 36.9
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 2.0e-165 587.4 1009 37.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 2.0e-165 587.4 999 38.5
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 2.6e-165 587.0 1012 38.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 5.7e-165 585.9 1012 38.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 8.2e-164 582.0 970 38.2
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-163 581.6 1027 37.1
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.8e-163 580.9 1019 36.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.6e-162 577.8 1023 38.3
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 7.7e-162 575.5 1007 37.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.7e-161 574.3 984 38.3
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.7e-161 574.3 1005 37.7
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 8.5e-161 572.0 846 41.0
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.1e-160 571.6 1003 36.6
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.1e-160 571.6 1003 36.6
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 1.1e-160 571.6 1052 37.1
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 2.5e-160 570.5 1017 37.4
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.2e-159 568.2 1025 36.8
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 5.2e-158 562.8 1002 36.6
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.7e-158 562.4 1130 34.2
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 2.0e-157 560.8 979 37.4
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.3e-156 558.1 604 47.8
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.7e-156 556.6 987 38.4
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.1e-155 553.1 901 42.1
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.0e-154 550.8 1036 36.0
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 1.3e-153 548.1 1016 40.3
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 5.5e-152 542.7 1018 39.1
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.3e-150 537.3 894 37.7
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 5.7e-149 532.7 733 43.0
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 4.1e-147 526.6 1051 34.7
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.9e-136 491.1 810 38.9
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.2e-132 477.6 1003 34.5
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 8.9e-126 455.7 939 35.7
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.2e-123 447.2 774 38.5
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.6e-122 443.4 627 40.7
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.1e-120 438.7 1017 33.7
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 5.6e-120 436.4 729 39.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 8.3e-116 422.5 765 38.2
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 5.4e-115 419.9 990 29.8
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 2.7e-114 417.5 494 43.9
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.7e-103 380.2 331 55.3
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.0e-102 377.1 333 53.5
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 5.3e-86 323.6 481 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.6e-82 312.0 489 37.0
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 2.3e-81 308.1 513 34.3
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 3.0e-81 307.8 319 50.2
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.5e-74 284.3 678 35.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 4.1e-70 270.8 695 31.2
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.6e-66 257.7 293 47.1
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.8e-60 237.7 635 31.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.7e-57 226.9 271 45.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 5.5e-51 207.2 250 46.8
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.2e-51 206.8 474 35.9
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.0e-49 203.0 211 51.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 6.7e-49 200.3 211 51.2
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 3.5e-45 188.0 215 49.3
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.3e-41 175.3 266 36.8
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 3.3e-40 171.4 217 42.4
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.7e-39 169.1 290 37.9
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.1e-38 166.4 208 43.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.7e-36 159.1 131 58.8
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.9e-36 158.3 599 29.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.5e-35 154.1 238 40.8
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 5.2e-33 147.5 211 41.2
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 8.8e-33 146.7 207 40.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.8e-32 143.3 225 36.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.1e-30 139.8 188 38.8
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 5.5e-27 127.5 102 52.0
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.7e-26 124.4 200 38.0
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 6.8e-25 120.6 200 38.5
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 4.9e-23 114.4 183 36.6
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 6.3e-23 114.0 161 40.4
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.8e-17 95.9 85 55.3
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.9e-15 88.6 181 33.1
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 6.4e-15 87.4 138 35.5
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 2.0e-13 82.4 63 58.7
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 1.2e-10 73.2 51 60.8
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 1.1e-09 70.1 183 32.8
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 7.5e-08 63.9 39 74.4
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 8.3e-07 60.5 99 39.4
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.2e-06 58.5 96 40.6
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 4.1e-06 58.2 26 84.6


User provided reference genes

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