Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C125G13 Lonicera japonica HOM05D000747 ORTHO05D007656 0.0e+00 1566.6 784 100.0
CSS0008408 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 1.3e-284 983.0 767 65.8
CSS0041176 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 9.4e-283 976.9 767 65.4
GSVIVG01033734001 Vitis vinifera HOM05D000747 ORTHO05D007656 1.0e-276 956.8 764 64.1
TAR633G1427 Trochodendron aralioides HOM05D000747 ORTHO05D007656 5.9e-269 931.0 771 62.4
Haze_19502 Corylus avellana HOM05D000747 ORTHO05D007656 7.7e-269 930.6 759 63.1
Hma1.2p1_0564F.1_g179100 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 2.9e-268 928.7 745 64.4
Cfa016498 Carpinus fangiana HOM05D000747 ORTHO05D007656 5.0e-268 927.9 752 63.2
QL07p041161 Quercus lobata HOM05D000747 ORTHO05D007656 2.4e-262 909.1 766 61.1
CiPaw.09G006200 Carya illinoinensis HOM05D000747 ORTHO05D007656 1.5e-256 889.8 762 61.0
DCAR_020792 Daucus carota HOM05D000140 ORTHO05D007656 2.0e-256 889.4 763 60.9
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 7.5e-256 887.5 767 61.3
vmacro07348 Vaccinium macrocarpon HOM05D000747 ORTHO05D007656 4.9e-255 884.8 760 62.0
Lsat_1_v5_gn_6_29141 Lactuca sativa HOM05D000747 ORTHO05D007656 6.4e-255 884.4 759 61.1
Prupe.7G121800 Prunus persica HOM05D000747 ORTHO05D007656 5.4e-254 881.3 767 59.2
HanXRQChr13g0400251 Helianthus annuus HOM05D000747 ORTHO05D007656 2.7e-253 879.0 756 60.3
Atru.chr8.1679 Acer truncatum HOM05D000747 ORTHO05D007656 1.1e-249 867.1 768 58.6
COL.COLO4_22271 Corchorus olitorius HOM05D000747 ORTHO05D007656 6.4e-247 857.8 768 57.2
Manes.08G017600 Manihot esculenta HOM05D000747 ORTHO05D007656 5.4e-246 854.7 768 58.3
TWI74G1020 Tripterygium wilfordii HOM05D000747 ORTHO05D007656 5.1e-244 848.2 766 57.6
Solyc09g008700.2 Solanum lycopersicum HOM05D000747 ORTHO05D007656 1.9e-243 846.3 759 57.6
Potri.016G096500 Populus trichocarpa HOM05D000747 ORTHO05D007656 2.5e-243 845.9 774 57.5
Ciclev10010940m.g Citrus clementina HOM05D000747 ORTHO05D007656 7.3e-243 844.3 766 57.6
RcHm_v2.0_Chr3g0471541 Rosa chinensis HOM05D000747 ORTHO05D007656 1.2e-242 843.6 770 57.0
MD12G1101300 Malus domestica HOM05D000747 ORTHO05D007656 2.8e-242 842.4 765 57.4
MD14G1095600 Malus domestica HOM05D000747 ORTHO05D007656 2.8e-242 842.4 765 56.6
Nitab4.5_0003554g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 4.7e-242 841.6 748 58.2
Sabra16G0100500 Salix brachista HOM05D000747 ORTHO05D007656 3.1e-241 839.0 780 56.8
Cpa.g.sc5.113 Carica papaya HOM05D000747 ORTHO05D007656 6.8e-241 837.8 768 56.2
Peaxi162Scf00500g00219 Petunia axillaris HOM05D000747 ORTHO05D007656 2.6e-240 835.9 759 57.0
Thecc.05G077000 Theobroma cacao HOM05D000747 ORTHO05D007656 9.9e-240 833.9 768 56.6
CAN.G1830.6 Capsicum annuum HOM05D000747 ORTHO05D007656 1.3e-239 833.6 762 56.6
Cc06_g04900 Coffea canephora HOM05D000747 ORTHO05D007656 2.9e-239 832.4 778 57.7
CANSAT80G1343 Cannabis sativa HOM05D000747 ORTHO05D007656 8.3e-239 830.9 768 56.5
FvH4_6g17370 Fragaria vesca HOM05D000747 ORTHO05D007656 2.4e-238 829.3 771 56.4
Gohir.A01G211500 Gossypium hirsutum HOM05D000747 ORTHO05D007656 3.2e-238 828.9 768 54.9
Gorai.002G245000 Gossypium raimondii HOM05D000747 ORTHO05D007656 3.2e-238 828.9 768 55.5
Gohir.D01G200300 Gossypium hirsutum HOM05D000747 ORTHO05D007656 2.3e-236 822.8 767 55.0
ECA233G1002 Erigeron canadensis HOM05D000747 ORTHO05D007656 1.9e-235 819.7 761 57.4
FAN05G2234 Fragaria x ananassa HOM05D000747 ORTHO05D007656 2.5e-235 819.3 769 55.8
Nn6g35131 Nelumbo nucifera HOM05D000747 ORTHO05D007656 7.3e-235 817.8 772 56.2
FAN09G3532 Fragaria x ananassa HOM05D000747 ORTHO05D007656 1.6e-234 816.6 769 55.5
FAN05G4185 Fragaria x ananassa HOM05D000747 ORTHO05D007656 1.8e-233 813.1 769 55.4
Medtr7g103210 Medicago truncatula HOM05D000747 ORTHO05D007656 3.1e-233 812.4 753 56.2
Lj1g0024972 Lotus japonicus HOM05D000747 ORTHO05D007656 3.4e-232 808.9 766 55.4
Rhsim03G0085000 Rhododendron simsii HOM05D000747 ORTHO05D007656 2.9e-231 805.8 756 58.3
Ca_08946_v3 Cicer arietinum L. HOM05D000747 ORTHO05D007656 1.2e-229 800.4 767 56.2
Psat3g037640 Pisum sativum HOM05D000747 ORTHO05D007656 2.1e-229 799.7 753 55.8
Migut.L01736 Erythranthe guttata HOM05D000747 ORTHO05D007656 1.7e-228 796.6 764 56.0
Eucgr.A01586 Eucalyptus grandis HOM05D000747 ORTHO05D007656 1.7e-228 796.6 772 53.9
Glyma.19G189100 Glycine max HOM05D000747 ORTHO05D007656 4.3e-227 792.0 767 55.4
TPR.G31502 Trifolium pratense HOM05D000747 ORTHO05D007656 1.1e-225 787.3 777 54.3
Phvul.001G184300 Phaseolus vulgaris HOM05D000747 ORTHO05D007656 6.9e-225 784.6 767 55.5
Nitab4.5_0006545g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 9.0e-225 784.3 712 56.5
SalBow5G3738 Salvia bowleyana HOM05D000747 ORTHO05D007656 1.2e-224 783.9 764 54.8
SGA_v2.0_scaffold277G46716 Striga asiatica HOM05D000747 ORTHO05D007656 4.2e-222 775.4 763 54.1
CsaV3_3G036630 Cucumis sativus L. HOM05D000747 ORTHO05D007656 3.9e-220 768.8 767 52.9
Sc02g0001290 Simmondsia chinensis HOM05D000747 ORTHO05D007656 1.5e-219 766.9 759 52.7
Aqoxy2G01524 Aquilegia oxysepala HOM05D000747 ORTHO05D007656 3.3e-219 765.8 767 52.8
Hma1.2p1_0564F.1_g179090 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 5.6e-219 765.0 628 63.2
MBI01_g23228_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D007656 7.3e-219 764.6 774 52.7
AUR62040177 Chenopodium quinoa HOM05D000747 ORTHO05D007656 2.8e-218 762.7 765 53.3
PSO339G4004 Papaver somniferum HOM05D000747 ORTHO05D007656 2.8e-218 762.7 772 51.9
PSO801G0354 Papaver somniferum HOM05D000747 ORTHO05D007656 3.6e-218 762.3 772 52.5
AUR62037922 Chenopodium quinoa HOM05D000747 ORTHO05D007656 5.3e-217 758.4 765 52.9
Sed0020895 Sechium edule HOM05D000747 ORTHO05D007656 6.9e-217 758.1 770 52.2
EL10Ac7g16731 Beta vulgaris HOM05D000747 ORTHO05D007656 3.4e-216 755.7 764 51.8
arahy.Tifrunner.gnm1.ann1.MP0EZL Arachis hypogaea HOM05D000747 ORTHO05D007656 4.9e-215 751.9 759 53.6
PGR004G0414 Punica granatum HOM05D000747 ORTHO05D007656 7.4e-211 738.0 774 52.7
ClCG10G019570 Citrullus lanatus HOM05D000747 ORTHO05D007656 1.3e-207 727.2 778 50.0
AL5G33970 Arabidopsis lyrata HOM05D000747 ORTHO05D007656 1.7e-207 726.9 756 50.4
arahy.Tifrunner.gnm1.ann1.KKMU7F Arachis hypogaea HOM05D000747 ORTHO05D007656 2.9e-207 726.1 795 51.6
CARHR162940 Cardamine hirsuta HOM05D000747 ORTHO05D007656 1.9e-206 723.4 760 50.8
Thhalv10010078m.g Eutrema salsugineum HOM05D000747 ORTHO05D007656 4.2e-206 722.2 758 49.9
BolC4t25555H Brassica oleracea HOM05D000747 ORTHO05D007656 9.3e-206 721.1 756 49.1
AT3G53090 Arabidopsis thaliana HOM05D000747 ORTHO05D007656 2.1e-205 719.9 755 49.3
THA.LOC104827502 Tarenaya hassleriana HOM05D000747 ORTHO05D007656 2.7e-205 719.5 762 51.2
Sp5g09230 Schrenkiella parvula HOM05D000747 ORTHO05D007656 4.6e-205 718.8 756 49.6
Aa31LG10G8250 Aethionema arabicum HOM05D000747 ORTHO05D007656 1.3e-204 717.2 757 50.7
BraA04t16334Z Brassica rapa HOM05D000747 ORTHO05D007656 5.1e-204 715.3 756 49.1
BcaC02g09186 Brassica carinata HOM05D000747 ORTHO05D007656 8.7e-204 714.5 756 48.8
C04p39810 Brassica napus HOM05D000747 ORTHO05D007656 8.7e-204 714.5 756 48.8
Ah.08g211170 Amaranthus hybridus HOM05D000747 ORTHO05D007656 1.6e-202 710.3 758 50.7
BcaB02g08538 Brassica carinata HOM05D000747 ORTHO05D007656 3.1e-201 706.1 760 48.7
A04p06290 Brassica napus HOM05D000747 ORTHO05D007656 1.2e-200 704.1 749 48.9
Sopen09g003500 Solanum pennellii HOM05D000747 ORTHO05D007656 1.4e-198 697.2 622 57.9
Lalb_Chr01g0018491 Lupinus albus HOM05D000747 ORTHO05D007656 4.3e-195 685.6 720 51.8
ATR0665G301 Amborella trichopoda HOM05D000747 ORTHO05D007656 3.4e-192 676.0 761 47.6
MELO3C009417.2 Cucumis melo HOM05D000747 ORTHO05D007656 5.3e-177 625.5 775 45.7
Zm00001eb217270 Zea mays HOM05D000747 ORTHO05D007656 5.3e-169 599.0 761 45.3
Hund20723 Selenicereus undatus HOM05D000747 ORTHO05D007656 1.3e-167 594.3 620 51.6
Glyma.03G188900 Glycine max HOM05D000747 ORTHO05D007656 3.5e-160 569.7 583 53.7
Oeu045250.1 Olea europaea HOM05D000747 ORTHO05D007656 1.2e-123 448.4 426 56.6
SEGI_31913 Sequoiadendron giganteum HOM05D000747 ORTHO05D007656 3.4e-123 446.8 690 38.1
FAN02G3129 Fragaria x ananassa HOM05D000747 ORTHO05D007656 2.9e-122 443.7 455 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2314 Anthoceros agrestis HOM05D000747 ORTHO05D007656 1.6e-117 427.9 793 35.2
FAN14G4063 Fragaria x ananassa HOM05D000747 ORTHO05D007656 6.0e-112 409.5 430 51.9
Carub.0005s1962 Capsella rubella HOM05D000747 ORTHO05D007656 7.1e-105 386.0 416 48.8
Mapoly0088s0076 Marchantia polymorpha HOM05D000747 ORTHO05D007656 2.7e-104 384.0 816 32.7
Pp3c16_5120 Physcomitrium patens HOM05D000747 ORTHO05D007656 7.1e-97 359.4 913 30.7
SMO119G0395 Selaginella moellendorffii HOM05D000747 ORTHO05D007656 2.7e-96 357.5 768 33.1
Pp3c6_23490 Physcomitrium patens HOM05D000747 ORTHO05D007656 2.6e-91 340.9 1003 29.0
Carub.0005s1961 Capsella rubella HOM05D000747 ORTHO05D007656 2.2e-90 337.8 331 50.5
Pp3c25_6380 Physcomitrium patens HOM05D000747 ORTHO05D007656 2.8e-85 320.9 994 27.4
SHI27765 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-84 317.4 443 43.1
Dinv37368 Davidia involucrata HOM05D000747 ORTHO05D007656 1.5e-83 315.1 213 73.2
Pp3c5_10600 Physcomitrium patens HOM05D000747 ORTHO05D007656 1.9e-81 308.1 882 28.9
CDE02G2001 Ceratophyllum demersum HOM05D000747 ORTHO05D007656 2.1e-80 304.7 419 44.9
Os03g0683866 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D007656 2.5e-78 297.7 344 47.4
HPP92_010012 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.7e-72 277.7 321 47.4
HPP92_009997 Vanilla planifolia HOM05D000747 ORTHO05D007656 8.8e-71 272.7 290 47.9
Dinv37370 Davidia involucrata HOM05D000747 ORTHO05D014617 2.2e-66 258.1 214 63.1
unitig_60.g25799 Utricularia gibba HOM05D000747 ORTHO05D007656 2.3e-55 221.5 336 41.4
HPP92_010010 Vanilla planifolia HOM05D000747 ORTHO05D007656 1.1e-49 202.6 225 46.2
Dinv37369 Davidia involucrata HOM05D000747 ORTHO05D034282 1.8e-44 185.3 124 72.6
CBR_g23790 Chara braunii HOM05D000747 ORTHO05D007656 2.4e-44 184.9 799 24.2
SHI27766 Sapria himalayana HOM05D005377 ORTHO05D034282 2.7e-35 154.8 221 38.5
HPP92_015200 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.9e-29 134.8 150 49.3
Os03g0683900 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D014617 4.1e-28 131.0 121 54.5
CDE02G2592 Ceratophyllum demersum HOM05D000747 ORTHO05D034282 2.3e-26 125.2 149 43.0
HPP92_009974 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.0e-19 102.1 95 54.7
MCO03G160 Micromonas commoda HOM05D000747 ORTHO05D007656 8.1e-16 90.1 146 38.4
SHI27767 Sapria himalayana HOM05D000747 ORTHO05D014617 5.2e-15 87.4 83 50.6
CDE02G0205 Ceratophyllum demersum HOM05D001265 ORTHO05D001241 2.0e-14 85.5 70 64.3
Cre03.g159200 Chlamydomonas reinhardtii HOM05D000747 ORTHO05D007656 9.2e-12 76.6 120 37.5
Hund20720 Selenicereus undatus HOM05D000747 ORTHO05D014617 2.1e-11 75.5 49 81.6
HanXRQChr10g0299121 Helianthus annuus HOM05D000747 ORTHO05D007656 3.5e-11 74.7 59 54.2
MBI01_g24434_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D014617 4.6e-11 74.3 45 88.9
HPP92_010039 Vanilla planifolia HOM05D000747 ORTHO05D014617 1.4e-07 62.8 88 36.4
HPP92_009989 Vanilla planifolia HOM05D022455 ORTHO05D014617 1.8e-07 62.4 42 76.2
HPP92_009996 Vanilla planifolia HOM05D022455 ORTHO05D014617 1.8e-07 62.4 42 76.2
Rhsim03G0095100 Rhododendron simsii HOM05D000518 ORTHO05D339537 4.0e-07 61.2 101 34.7
HPP92_009995 Vanilla planifolia HOM05D022455 ORTHO05D014617 4.0e-07 61.2 42 73.8
HPP92_010037 Vanilla planifolia HOM05D022455 ORTHO05D014617 1.2e-06 59.7 42 73.8


User provided reference genes

Program Settings