Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.7e-160 568.2 284 100.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 7.4e-129 464.2 278 87.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.5e-121 439.9 278 83.1
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.7e-120 436.4 278 82.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.8e-119 433.0 267 84.6
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 9.1e-119 430.6 277 81.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 6.5e-117 424.5 273 82.1
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.5e-117 424.5 276 81.9
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.9e-116 422.9 271 81.9
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.5e-116 421.4 276 80.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-115 419.9 267 82.8
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-115 419.9 269 82.5
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.7e-115 419.1 267 82.8
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.1e-115 417.9 273 81.0
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.4e-114 416.8 276 81.5
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 5.2e-114 414.8 281 79.4
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 5.2e-114 414.8 277 79.8
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.0e-113 412.9 279 79.2
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.7e-112 409.8 282 79.1
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.4e-111 406.8 281 78.3
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.1e-111 404.1 276 78.3
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.6e-110 403.3 275 78.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.7e-110 402.5 277 78.0
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.5e-110 401.7 267 79.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 8.0e-107 391.0 278 74.8
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 6.8e-106 387.9 278 77.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.6e-105 386.0 279 75.3
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-102 376.3 282 73.8
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-102 376.3 282 73.8
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 3.5e-102 375.6 239 82.4
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-101 373.2 276 74.6
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-101 373.2 276 74.6
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 5.6e-100 368.2 239 81.6
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-98 364.0 263 76.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-98 364.0 263 76.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.0e-98 364.0 263 76.0
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.4e-98 363.6 281 72.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.8e-98 363.2 269 74.3
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 8.9e-98 360.9 263 75.3
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-96 356.7 266 73.3
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-96 356.3 248 76.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.7e-96 355.5 244 79.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.4e-95 353.6 247 76.5
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.4e-95 352.8 260 73.5
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 3.0e-93 345.9 236 79.2
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.3e-92 342.0 238 76.9
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.2e-91 340.5 238 77.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-91 340.5 242 76.9
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-91 340.5 242 76.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 6.2e-91 338.2 242 76.4
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 6.2e-91 338.2 242 76.4
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 6.2e-91 338.2 242 76.4
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 8.9e-90 334.3 259 71.0
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.2e-89 334.0 243 76.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.4e-89 332.0 227 78.9
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 9.8e-89 330.9 243 75.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.1e-84 317.4 229 77.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-84 317.4 231 76.2
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-80 303.5 248 67.3
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.6e-78 297.0 157 96.8
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-74 283.5 233 69.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.3e-74 283.1 208 74.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.3e-74 283.1 208 74.5
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.2e-71 272.7 282 59.6
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-70 270.8 267 59.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-69 267.7 215 70.7
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.2e-66 255.4 178 78.1
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 2.6e-65 253.1 149 87.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-63 247.7 178 77.0
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 3.0e-53 213.0 155 74.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.3e-52 209.5 157 73.9
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 6.9e-50 201.8 153 73.9
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-47 193.4 149 71.1
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.2e-46 191.0 159 70.4
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-44 184.1 246 49.2
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.9e-44 183.7 106 86.8
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 9.6e-44 181.4 159 67.9
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.1e-43 178.3 94 92.6
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-42 176.4 151 64.2
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.2e-41 174.5 211 50.7
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.8e-40 169.5 146 68.5
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.0e-37 161.4 92 87.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-37 161.0 92 84.8
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.9e-37 159.5 91 82.4
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-34 151.0 89 86.5
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.8e-34 150.6 90 83.3
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 9.0e-34 148.3 80 86.2
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-33 147.9 136 66.2
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.5e-33 147.5 76 90.8
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.9e-32 143.3 88 80.7
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.5e-31 139.0 81 84.0
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 7.9e-30 135.2 79 86.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.3e-28 129.8 70 87.1
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.3e-26 122.5 79 78.5
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 5.5e-23 112.5 75 72.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-22 111.3 59 88.1
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.4e-20 102.1 58 84.5
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 7.4e-20 102.1 58 84.5
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 7.4e-20 102.1 58 84.5
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-19 99.4 74 66.2
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.8e-16 89.7 51 84.3
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 2.1e-14 84.0 46 82.6
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-14 83.2 67 65.7
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.0e-13 81.6 47 83.0
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 8.8e-13 78.6 42 85.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-12 76.3 131 40.5
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.8e-11 73.6 51 64.7
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 7.0e-10 68.9 32 93.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 7.0e-10 68.9 32 93.8
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 7.0e-10 68.9 32 93.8
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-09 68.2 43 72.1
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-09 67.8 48 64.6


User provided reference genes

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