Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 2.3e-54 215.3 110 100.0
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 1.6e-47 192.6 109 91.7
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.6e-47 192.6 109 91.7
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.6e-47 192.6 109 91.7
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 1.8e-46 189.1 109 89.9
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.3e-46 188.7 109 89.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.3e-46 188.7 109 89.0
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 6.8e-46 187.2 109 89.9
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 3.4e-45 184.9 109 87.2
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-45 184.5 109 86.2
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-45 184.5 109 86.2
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-45 184.5 109 86.2
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.4e-45 184.5 109 86.2
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 5.8e-45 184.1 109 86.2
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 5.8e-45 184.1 109 86.2
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-44 183.0 109 85.3
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-44 183.0 109 85.3
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-44 183.0 109 85.3
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 1.7e-44 182.6 109 84.4
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 4.9e-44 181.0 109 85.3
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 8.3e-44 180.3 109 84.4
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 1.1e-43 179.9 108 86.1
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-43 179.1 109 86.2
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-43 179.1 109 86.2
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 1.8e-43 179.1 109 84.4
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.8e-43 179.1 109 85.3
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 1.8e-43 179.1 109 84.4
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 2.4e-43 178.7 108 86.1
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 4.1e-43 177.9 109 85.3
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 2.0e-42 175.6 109 81.7
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 2.0e-42 175.6 109 81.7
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.0e-42 175.6 109 79.8
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.0e-42 175.6 109 79.8
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 3.5e-42 174.9 109 84.4
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.5e-42 174.9 109 82.6
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 3.5e-42 174.9 109 83.5
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 7.8e-42 173.7 109 79.8
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 7.8e-42 173.7 109 79.8
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 1.3e-41 172.9 109 80.7
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 1.3e-41 172.9 109 80.7
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 1.7e-41 172.6 109 81.7
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 3.9e-41 171.4 109 82.6
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 1.5e-40 169.5 111 80.2
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.5e-40 168.7 107 83.2
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 3.3e-40 168.3 109 79.8
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 3.3e-40 168.3 109 76.1
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 3.3e-40 168.3 107 84.1
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 7.3e-40 167.2 109 79.8
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.2e-39 166.4 107 82.2
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 79.8
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 1.6e-39 166.0 109 76.1
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 4.7e-39 164.5 109 78.9
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 4.7e-39 164.5 109 78.9
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 4.7e-39 164.5 109 78.9
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 6.2e-39 164.1 108 78.7
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 1.4e-38 162.9 109 73.4
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-38 162.9 107 77.6
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-38 162.9 107 77.6
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-38 162.9 107 77.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-38 162.9 107 77.6
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 2.3e-38 162.2 109 77.1
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 2.3e-38 162.2 109 77.1
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 3.1e-38 161.8 109 80.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.1e-38 161.8 102 80.4
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.8e-38 160.6 100 83.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 1.5e-37 159.5 102 79.4
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.5e-37 157.1 108 77.8
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 8.3e-36 153.7 106 75.5
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.0e-35 150.6 109 73.4
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 9.2e-35 150.2 108 72.2
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 2.7e-34 148.7 88 87.5
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.8e-34 147.1 104 74.0
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 8.6e-33 143.7 109 72.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 3.6e-31 138.3 88 77.3
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 6.2e-31 137.5 103 66.0
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.4e-30 136.3 105 70.5
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 2.3e-30 135.6 155 52.3
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 6.8e-30 134.0 105 68.6
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 4.4e-29 131.3 109 68.8
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 5.8e-29 131.0 81 84.0
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 5.8e-29 131.0 80 85.0
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.3e-28 129.8 81 84.0
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.9e-28 128.6 78 82.1
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 1.4e-27 126.3 81 77.8
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 1.4e-27 126.3 81 80.2
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 1.9e-27 125.9 80 82.5
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.9e-27 125.9 81 80.2
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.9e-27 125.9 109 64.2
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.2e-27 125.2 80 80.0
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.2e-27 125.2 81 77.8
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 5.4e-27 124.4 86 76.7
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-26 123.2 105 66.7
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.6e-26 122.9 96 69.8
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 7.8e-26 120.6 90 75.6
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 7.8e-26 120.6 67 83.6
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 7.8e-26 120.6 67 83.6
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 3.9e-25 118.2 81 76.5
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 6.6e-25 117.5 86 74.4
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 8.6e-25 117.1 83 72.3
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 8.6e-25 117.1 83 72.3
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.1e-24 116.7 67 86.6
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 1.9e-24 115.9 81 75.3
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.3e-24 115.2 86 73.3
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 3.1e-22 108.6 81 74.1
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.0e-22 108.2 85 67.1
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 4.0e-22 108.2 60 86.7
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 5.2e-22 107.8 70 74.3
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.2e-22 107.8 91 64.8
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.6e-21 105.5 80 73.8
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.6e-21 105.5 82 67.1
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-18 96.7 57 82.5
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.1e-18 95.9 70 72.9
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.5e-18 95.1 60 78.3
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 6.0e-18 94.4 52 80.8
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.8e-18 94.0 52 86.5
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.7e-17 92.8 109 52.3
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.0e-17 92.0 78 69.2
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.0e-17 92.0 78 69.2
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.0e-17 92.0 78 69.2
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.9e-17 91.7 107 51.4
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 6.6e-17 90.9 55 89.1
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 3.3e-16 88.6 52 80.8
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 9.6e-16 87.0 52 80.8
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 2.1e-15 85.9 68 58.8
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.8e-14 82.8 77 63.6
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 5.2e-14 81.3 109 50.5
Nitab4.5_0002752g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.9e-14 80.9 48 85.4
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 1.7e-12 76.3 65 67.7
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.4e-11 73.2 40 77.5
TPR.G39966 Trifolium pratense HOM05D000533 ORTHO05D002807 4.2e-11 71.6 40 80.0
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 5.4e-11 71.2 45 73.3
HanXRQChr00c0703g0576921 Helianthus annuus HOM05D000533 ORTHO05D002807 1.7e-09 66.2 54 64.8
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 8.7e-09 63.9 58 44.8
SHI46653 Sapria himalayana HOM05D000533 ORTHO05D002807 9.6e-08 60.5 81 38.3
Sc12g0004050 Simmondsia chinensis HOM05D000533 ORTHO05D002807 2.1e-07 59.3 95 33.7
ATMG01275 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 3.6e-07 58.5 70 40.0
Gorai.001G164200 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.6e-07 58.5 70 40.0
Hma1.2p1_1191F.1_g265460 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.6e-07 58.5 78 38.5
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 3.6e-07 58.5 70 40.0
TPR.G74 Trifolium pratense HOM05D000533 ORTHO05D002807 3.6e-07 58.5 70 40.0
CDE02G0273 Ceratophyllum demersum HOM05D000533 ORTHO05D002807 4.8e-07 58.2 76 40.8
unitig_87.g27987 Utricularia gibba HOM05D000533 ORTHO05D002807 4.8e-07 58.2 76 36.8
CAN.G1673.5 Capsicum annuum HOM05D000533 ORTHO05D002807 6.2e-07 57.8 78 38.5
SalBow1G1296 Salvia bowleyana HOM05D000533 ORTHO05D002807 6.2e-07 57.8 78 38.5
SalBow1G1594 Salvia bowleyana HOM05D000533 ORTHO05D002807 6.2e-07 57.8 78 38.5
SHI50269 Sapria himalayana HOM05D000533 ORTHO05D002807 6.2e-07 57.8 81 37.0
Solyc00g094530.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.2e-07 57.8 78 38.5
SGA_v2.0_scaffold255G45330 Striga asiatica HOM05D008696 ORTHO05D002807 6.2e-07 57.8 78 38.5
HanXRQChr08g0236071 Helianthus annuus HOM05D000533 ORTHO05D002807 8.1e-07 57.4 78 38.5
HanXRQMTg0579311 Helianthus annuus HOM05D000533 ORTHO05D002807 8.1e-07 57.4 78 38.5
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 8.1e-07 57.4 38 73.7
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 1.4e-06 56.6 67 41.8
Nitab4.5_0008578g0070 Nicotiana tabacum HOM05D008696 ORTHO05D002807 1.4e-06 56.6 70 38.6
SHI52701 Sapria himalayana HOM05D000533 ORTHO05D002807 2.4e-06 55.8 81 37.0
SabraMtG0003500 Salix brachista HOM05D000533 ORTHO05D002807 3.1e-06 55.5 60 41.7
Nitab4.5_0011987g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.3e-06 54.7 67 37.3
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 6.9e-06 54.3 40 70.0
COL.COLO4_04416 Corchorus olitorius HOM05D000533 ORTHO05D002807 9.0e-06 53.9 60 40.0
SHI35933 Sapria himalayana HOM05D000533 ORTHO05D002807 9.0e-06 53.9 81 35.8


User provided reference genes

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