Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 2.1e-117 425.6 205 100.0
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 6.7e-71 271.2 124 100.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 9.6e-70 267.3 148 85.1
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 6.2e-69 264.6 127 96.9
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 2.4e-68 262.7 124 96.8
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.0e-68 261.9 124 96.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.5e-67 258.5 203 66.0
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.0e-66 257.3 124 96.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.9e-66 255.8 124 94.4
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 4.9e-66 255.0 124 93.5
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 8.4e-66 254.2 126 92.9
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-65 253.4 124 93.5
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-65 253.4 124 93.5
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-65 253.4 124 93.5
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-65 253.4 124 93.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-65 253.4 137 86.9
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-65 253.4 137 86.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-65 253.4 137 86.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-65 253.4 137 86.9
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.1e-65 251.1 137 85.4
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 7.1e-65 251.1 152 81.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 9.3e-65 250.8 125 93.6
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.6e-64 250.0 137 85.4
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-64 250.0 137 84.7
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-64 250.0 137 84.7
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-64 250.0 137 84.7
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.1e-64 249.6 124 94.4
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.7e-64 249.2 124 90.3
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.7e-64 249.2 124 90.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.6e-64 248.4 123 92.7
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 4.6e-64 248.4 124 91.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.9e-64 247.7 124 91.1
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.0e-63 247.3 124 91.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 3.0e-63 245.7 124 91.1
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.9e-63 245.4 131 85.5
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 5.1e-63 245.0 124 91.1
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 5.1e-63 245.0 124 91.1
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 5.1e-63 245.0 124 91.1
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 5.1e-63 245.0 124 91.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 5.1e-63 245.0 124 91.1
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.1e-62 243.8 150 80.0
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.1e-62 243.8 150 80.0
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-62 243.4 124 90.3
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.5e-62 243.4 137 82.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.5e-62 242.7 124 90.3
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 9.6e-62 240.7 180 69.4
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.6e-61 240.0 124 89.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.6e-61 240.0 124 89.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.8e-61 239.2 117 93.2
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.1e-60 235.7 129 85.3
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 9.0e-60 234.2 123 87.8
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-59 233.4 124 85.5
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 7.6e-59 231.1 124 87.9
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 8.5e-58 227.6 137 81.0
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.5e-57 226.1 126 84.9
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.5e-57 226.1 126 84.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.2e-57 225.7 137 77.4
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.1e-56 223.0 137 77.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 3.9e-55 218.8 116 89.7
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-53 213.8 114 86.8
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-53 213.4 109 87.2
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 4.1e-52 208.8 106 87.7
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.7e-50 203.4 101 91.1
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.4e-49 197.6 116 81.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.1e-47 191.8 123 75.6
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-41 174.1 99 83.8
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 7.2e-41 171.4 89 92.1
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.8e-39 166.8 89 84.3
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.0e-31 141.0 138 58.7
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.0e-31 141.0 138 58.7
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.4e-28 129.8 66 86.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 4.5e-27 125.6 124 54.8
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-25 120.2 81 70.4
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-23 113.2 99 58.6
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.2e-23 112.1 67 80.6
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-18 97.4 54 81.5
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.9e-18 96.3 98 55.1
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-15 87.8 51 74.5
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-15 87.8 64 68.8
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 3.4e-14 82.8 47 83.0
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 4.9e-13 79.0 68 60.3
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 8.3e-13 78.2 53 66.0
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-09 67.8 42 81.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-09 66.6 44 65.9


User provided reference genes

Program Settings