Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1189T7 Lonicera japonica HOM05D000880 ORTHO05D235365 2.8e-43 178.3 96 100.0
Lj1A24T62 Lonicera japonica HOM05D000880 ORTHO05D006637 4.7e-11 71.2 44 86.4
MD03G1288700 Malus domestica HOM05D000880 ORTHO05D006637 5.8e-09 64.3 44 77.3
MD11G1309400 Malus domestica HOM05D000880 ORTHO05D006637 5.8e-09 64.3 44 77.3
Duzib133G0301 Durio zibethinus HOM05D000880 ORTHO05D006637 7.6e-09 63.9 43 76.7
Solyc09g075180.3 Solanum lycopersicum HOM05D000880 ORTHO05D006637 7.6e-09 63.9 51 66.7
COL.COLO4_23340 Corchorus olitorius HOM05D000880 ORTHO05D006637 9.9e-09 63.5 43 79.1
Hma1.2p1_0494F.1_g165210 Hydrangea macrophylla HOM05D000880 ORTHO05D006637 9.9e-09 63.5 43 79.1
Hma1.2p1_1471F.1_g285630 Hydrangea macrophylla HOM05D000880 ORTHO05D006637 9.9e-09 63.5 43 79.1
Thecc.01G301200 Theobroma cacao HOM05D000880 ORTHO05D006637 9.9e-09 63.5 43 79.1
CAN.G472.9 Capsicum annuum HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 76.7
CARHR142990 Cardamine hirsuta HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 76.7
Duzib138G0333 Durio zibethinus HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 79.1
Nitab4.5_0001879g0150 Nicotiana tabacum HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 76.7
Sopen09g030000 Solanum pennellii HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 76.7
PGSC0003DMG400031812 Solanum tuberosum HOM05D000880 ORTHO05D006637 1.3e-08 63.2 43 76.7
Sed0003394 Sechium edule HOM05D000880 ORTHO05D006637 1.7e-08 62.8 44 77.3
Dinv19685 Davidia involucrata HOM05D000880 ORTHO05D006637 2.2e-08 62.4 43 76.7
Gohir.A11G114200 Gossypium hirsutum HOM05D000880 ORTHO05D006637 2.2e-08 62.4 43 76.7
Prupe.8G262000 Prunus persica HOM05D000880 ORTHO05D006637 2.2e-08 62.4 43 76.7
THA.LOC104817490 Tarenaya hassleriana HOM05D000880 ORTHO05D006637 2.2e-08 62.4 43 74.4
Aa31LG1G28930 Aethionema arabicum HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
AL4G47170 Arabidopsis lyrata HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
AT2G47590 Arabidopsis thaliana HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
CSS0020775 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 76.7
CiPaw.07G109700 Carya illinoinensis HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
Ciclev10020039m.g Citrus clementina HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
Dinv33056 Davidia involucrata HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
Thhalv10001442m.g Eutrema salsugineum HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
Lalb_Chr02g0146381 Lupinus albus HOM05D000880 ORTHO05D006637 2.9e-08 62.0 43 74.4
Sed0001482 Sechium edule HOM05D000880 ORTHO05D006637 2.9e-08 62.0 44 75.0
CiPaw.08G094800 Carya illinoinensis HOM05D000880 ORTHO05D006637 3.8e-08 61.6 43 74.4
Gohir.D11G119300 Gossypium hirsutum HOM05D000880 ORTHO05D006637 3.8e-08 61.6 43 76.7
Gorai.007G127800 Gossypium raimondii HOM05D000880 ORTHO05D006637 3.8e-08 61.6 43 76.7
Lj5g0001440 Lotus japonicus HOM05D000880 ORTHO05D006637 3.8e-08 61.6 43 72.1
Peaxi162Scf00001g04232 Petunia axillaris HOM05D000880 ORTHO05D006637 3.8e-08 61.6 43 74.4
Aqoxy2G02935 Aquilegia oxysepala HOM05D000880 ORTHO05D006637 4.9e-08 61.2 43 69.8
CANSAT25G3636 Cannabis sativa HOM05D000880 ORTHO05D006637 4.9e-08 61.2 43 74.4
ClCG09G005840 Citrullus lanatus HOM05D000880 ORTHO05D006637 4.9e-08 61.2 43 76.7
MELO3C015998.2 Cucumis melo HOM05D000880 ORTHO05D006637 4.9e-08 61.2 43 76.7
Glyma.02G017500 Glycine max HOM05D000880 ORTHO05D006637 4.9e-08 61.2 51 60.8
Manes.05G061900 Manihot esculenta HOM05D000880 ORTHO05D006637 4.9e-08 61.2 43 72.1
THA.LOC104827667 Tarenaya hassleriana HOM05D000880 ORTHO05D006637 4.9e-08 61.2 44 70.5
Actinidia01488 Actinidia chinensis HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
BcaB02g08760 Brassica carinata HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
A05p00340 Brassica napus HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
C04p00260 Brassica napus HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
BolC4t21669H Brassica oleracea HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
BraA05t19032Z Brassica rapa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
Carub.0004s3032 Capsella rubella HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
FvH4_2g25790 Fragaria vesca HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
FAN15G0942 Fragaria x ananassa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.4e-08 60.8 43 74.4
FAN24G2572 Fragaria x ananassa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
FAN27G3418 Fragaria x ananassa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
Lj2A1195G26 Lonicera japonica HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
Potri.002G204000 Populus trichocarpa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
Potri.014G128500 Populus trichocarpa HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
RcHm_v2.0_Chr6g0294101 Rosa chinensis HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 74.4
Sabra02G0155200 Salix brachista HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
Sp4g29520 Schrenkiella parvula HOM05D000880 ORTHO05D006637 6.4e-08 60.8 43 72.1
EL10Ac7g17512 Beta vulgaris HOM05D000880 ORTHO05D006637 8.4e-08 60.5 44 68.2
Nitab4.5_0002433g0070 Nicotiana tabacum HOM05D000880 ORTHO05D006637 8.4e-08 60.5 43 72.1
TWI59G0862 Tripterygium wilfordii HOM05D000880 ORTHO05D006637 8.4e-08 60.5 44 70.5
VMungo0720G2512 Vigna mungo HOM05D000880 ORTHO05D006637 8.4e-08 60.5 43 69.8
Aa31LG1G8870 Aethionema arabicum HOM05D000880 ORTHO05D006637 1.1e-07 60.1 44 70.5
Ah.08g213410 Amaranthus hybridus HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 72.1
Cfa005907 Carpinus fangiana HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 69.8
AUR62008668 Chenopodium quinoa HOM05D000880 ORTHO05D006637 1.1e-07 60.1 44 70.5
Haze_04943 Corylus avellana HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 69.8
DCAR_002839 Daucus carota HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 72.1
Sabra14G0095400 Salix brachista HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 72.1
TPR.G33985 Trifolium pratense HOM05D000880 ORTHO05D006637 1.1e-07 60.1 43 72.1
CsaV3_7G029300 Cucumis sativus L. HOM05D000880 ORTHO05D006637 1.4e-07 59.7 43 74.4
Lsat_1_v5_gn_9_5701 Lactuca sativa HOM05D000880 ORTHO05D006637 1.4e-07 59.7 43 72.1
Phvul.007G147100 Phaseolus vulgaris HOM05D000880 ORTHO05D006637 1.4e-07 59.7 43 69.8
QL12p028410 Quercus lobata HOM05D000880 ORTHO05D006637 1.4e-07 59.7 43 72.1
Sc05g0003800 Simmondsia chinensis HOM05D000880 ORTHO05D006637 1.4e-07 59.7 43 74.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-07 59.7 43 72.1
ECA247G0418 Erigeron canadensis HOM05D000880 ORTHO05D006637 1.9e-07 59.3 43 72.1
Glyma.10G017900 Glycine max HOM05D000880 ORTHO05D006637 1.9e-07 59.3 51 58.8
Nn3g21502 Nelumbo nucifera HOM05D000880 ORTHO05D006637 1.9e-07 59.3 43 72.1
Hund18174 Selenicereus undatus HOM05D000880 ORTHO05D006637 1.9e-07 59.3 43 72.1
CSS0004249 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D006637 3.2e-07 58.5 43 74.4
CSS0044226 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D006637 3.2e-07 58.5 43 74.4
Medtr1g088420 Medicago truncatula HOM05D000880 ORTHO05D006637 3.2e-07 58.5 43 69.8
Psat6g165200 Pisum sativum HOM05D000880 ORTHO05D006637 3.2e-07 58.5 43 67.4
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.2e-07 58.5 43 72.1
CiPaw.07G109500 Carya illinoinensis HOM05D000880 ORTHO05D006637 4.2e-07 58.2 43 69.8
AUR62025576 Chenopodium quinoa HOM05D000880 ORTHO05D006637 4.2e-07 58.2 44 65.9
Ca_10330_v3 Cicer arietinum L. HOM05D000880 ORTHO05D006637 4.2e-07 58.2 43 67.4
Lj3A955T42 Lonicera japonica HOM05D000880 ORTHO05D006637 4.2e-07 58.2 42 76.2
Atru.chr5.1141 Acer truncatum HOM05D000880 ORTHO05D006637 5.4e-07 57.8 43 67.4
Hma1.2p1_0134F.1_g061490 Hydrangea macrophylla HOM05D000880 ORTHO05D006637 5.4e-07 57.8 43 69.8
Manes.01G219700 Manihot esculenta HOM05D000880 ORTHO05D006637 7.1e-07 57.4 43 69.8
PSO210G6973 Papaver somniferum HOM05D000880 ORTHO05D006637 7.1e-07 57.4 43 69.8
PSO832G1198 Papaver somniferum HOM05D000880 ORTHO05D006637 7.1e-07 57.4 43 69.8
Actinidia24819 Actinidia chinensis HOM05D000880 ORTHO05D006637 9.3e-07 57.0 43 69.8
Lsat_1_v5_gn_5_191301 Lactuca sativa HOM05D000880 ORTHO05D006637 9.3e-07 57.0 43 69.8
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 9.3e-07 57.0 43 67.4
Cpa.g.sc9.257 Carica papaya HOM05D000880 ORTHO05D006637 1.2e-06 56.6 43 69.8
HanXRQChr10g0285021 Helianthus annuus HOM05D000880 ORTHO05D006637 1.2e-06 56.6 43 67.4
Oeu046675.1 Olea europaea HOM05D000880 ORTHO05D006637 1.2e-06 56.6 43 69.8
Migut.D00149 Erythranthe guttata HOM05D000880 ORTHO05D006637 2.1e-06 55.8 43 65.1
Ah.15g093170 Amaranthus hybridus HOM05D000880 ORTHO05D006637 2.7e-06 55.5 43 65.1
arahy.Tifrunner.gnm1.ann1.1X1TH0 Arachis hypogaea HOM05D000880 ORTHO05D006637 2.7e-06 55.5 43 62.8
arahy.Tifrunner.gnm1.ann1.5E2DVT Arachis hypogaea HOM05D000880 ORTHO05D006637 2.7e-06 55.5 43 62.8
MSTRG.21636 Avicennia marina HOM05D000880 ORTHO05D006637 2.7e-06 55.5 44 63.6
SalBow3G1763 Salvia bowleyana HOM05D000880 ORTHO05D006637 3.5e-06 55.1 43 62.8
TAR365G0436 Trochodendron aralioides HOM05D000880 ORTHO05D006637 3.5e-06 55.1 43 65.1
SEGI_10586 Sequoiadendron giganteum HOM05D000880 ORTHO05D006637 4.6e-06 54.7 51 54.9
ATR0787G164 Amborella trichopoda HOM05D000880 ORTHO05D006637 6.0e-06 54.3 51 54.9
ECA248G2553 Erigeron canadensis HOM05D000880 ORTHO05D006637 6.0e-06 54.3 43 65.1
CDE01G0802 Ceratophyllum demersum HOM05D000880 ORTHO05D006637 7.8e-06 53.9 44 63.6
CDE12G0252 Ceratophyllum demersum HOM05D000880 ORTHO05D006637 7.8e-06 53.9 44 63.6
Eucgr.H01108 Eucalyptus grandis HOM05D000880 ORTHO05D006637 7.8e-06 53.9 52 51.9


User provided reference genes

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